Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
USP3Q9Y6I4 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
USP3Q9Y6I4 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
USP3Q9Y6I4 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC18.46■□□□□ 0.55
USP3Q9Y6I4 AC009078.2-202ENST00000463353 338 ntBASIC18.46■□□□□ 0.55
USP3Q9Y6I4 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC18.46■□□□□ 0.55
USP3Q9Y6I4 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
USP3Q9Y6I4 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
USP3Q9Y6I4 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC18.46■□□□□ 0.55
USP3Q9Y6I4 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC18.46■□□□□ 0.55
USP3Q9Y6I4 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC18.46■□□□□ 0.55
USP3Q9Y6I4 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
USP3Q9Y6I4 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
USP3Q9Y6I4 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC18.46■□□□□ 0.55
USP3Q9Y6I4 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
USP3Q9Y6I4 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC18.46■□□□□ 0.55
USP3Q9Y6I4 SIGLEC16-201ENST00000599858 1437 ntBASIC18.46■□□□□ 0.55
USP3Q9Y6I4 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
USP3Q9Y6I4 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
USP3Q9Y6I4 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
USP3Q9Y6I4 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC18.46■□□□□ 0.54
USP3Q9Y6I4 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
USP3Q9Y6I4 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
USP3Q9Y6I4 AL356309.3-201ENST00000624132 1934 ntBASIC18.45■□□□□ 0.54
USP3Q9Y6I4 FUT8-AS1-201ENST00000621019 1521 ntBASIC18.45■□□□□ 0.54
USP3Q9Y6I4 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC18.45■□□□□ 0.54
USP3Q9Y6I4 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC18.45■□□□□ 0.54
USP3Q9Y6I4 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC18.45■□□□□ 0.54
USP3Q9Y6I4 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
USP3Q9Y6I4 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC18.45■□□□□ 0.54
USP3Q9Y6I4 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
USP3Q9Y6I4 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
USP3Q9Y6I4 PPIE-208ENST00000470213 927 ntTSL 3 BASIC18.45■□□□□ 0.54
USP3Q9Y6I4 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC18.45■□□□□ 0.54
USP3Q9Y6I4 SART3-203ENST00000546611 1184 ntBASIC18.45■□□□□ 0.54
USP3Q9Y6I4 COX5A-202ENST00000562233 441 ntTSL 3 BASIC18.45■□□□□ 0.54
USP3Q9Y6I4 STK25P1-201ENST00000585406 838 ntBASIC18.45■□□□□ 0.54
USP3Q9Y6I4 SLC25A6P4-201ENST00000586535 553 ntBASIC18.45■□□□□ 0.54
USP3Q9Y6I4 AL139288.1-201ENST00000623748 933 ntBASIC18.45■□□□□ 0.54
USP3Q9Y6I4 LINC01451-201ENST00000623792 534 ntBASIC18.45■□□□□ 0.54
USP3Q9Y6I4 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC18.45■□□□□ 0.54
USP3Q9Y6I4 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
USP3Q9Y6I4 PODN-203ENST00000395871 2744 ntTSL 5 BASIC18.45■□□□□ 0.54
USP3Q9Y6I4 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
USP3Q9Y6I4 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
USP3Q9Y6I4 LETM1P2-201ENST00000597330 2178 ntBASIC18.45■□□□□ 0.54
USP3Q9Y6I4 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC18.45■□□□□ 0.54
USP3Q9Y6I4 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
USP3Q9Y6I4 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
USP3Q9Y6I4 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
USP3Q9Y6I4 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC18.45■□□□□ 0.54
USP3Q9Y6I4 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
USP3Q9Y6I4 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
USP3Q9Y6I4 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC18.44■□□□□ 0.54
USP3Q9Y6I4 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
USP3Q9Y6I4 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
USP3Q9Y6I4 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC18.44■□□□□ 0.54
USP3Q9Y6I4 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC18.44■□□□□ 0.54
USP3Q9Y6I4 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
USP3Q9Y6I4 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
USP3Q9Y6I4 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
USP3Q9Y6I4 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
USP3Q9Y6I4 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
USP3Q9Y6I4 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
USP3Q9Y6I4 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC18.44■□□□□ 0.54
USP3Q9Y6I4 SPDYE21P-201ENST00000413323 827 ntBASIC18.44■□□□□ 0.54
USP3Q9Y6I4 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC18.44■□□□□ 0.54
USP3Q9Y6I4 FAM197Y8-203ENST00000450145 560 ntBASIC18.44■□□□□ 0.54
USP3Q9Y6I4 SCARNA2-201ENST00000458748 420 ntBASIC18.44■□□□□ 0.54
USP3Q9Y6I4 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
USP3Q9Y6I4 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC18.44■□□□□ 0.54
USP3Q9Y6I4 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC18.44■□□□□ 0.54
USP3Q9Y6I4 NKAPP1-205ENST00000585790 367 ntBASIC18.44■□□□□ 0.54
USP3Q9Y6I4 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC18.44■□□□□ 0.54
USP3Q9Y6I4 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC18.44■□□□□ 0.54
USP3Q9Y6I4 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
USP3Q9Y6I4 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
USP3Q9Y6I4 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
USP3Q9Y6I4 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC18.44■□□□□ 0.54
USP3Q9Y6I4 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
USP3Q9Y6I4 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
USP3Q9Y6I4 LINC00304-203ENST00000565008 1864 ntBASIC18.43■□□□□ 0.54
USP3Q9Y6I4 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
USP3Q9Y6I4 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
USP3Q9Y6I4 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
USP3Q9Y6I4 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
USP3Q9Y6I4 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
USP3Q9Y6I4 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
USP3Q9Y6I4 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC18.43■□□□□ 0.54
USP3Q9Y6I4 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
USP3Q9Y6I4 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC18.43■□□□□ 0.54
USP3Q9Y6I4 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
USP3Q9Y6I4 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
USP3Q9Y6I4 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC18.43■□□□□ 0.54
USP3Q9Y6I4 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
USP3Q9Y6I4 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
USP3Q9Y6I4 MRPL3P1-201ENST00000400109 1033 ntBASIC18.43■□□□□ 0.54
USP3Q9Y6I4 HIST2H3DP1-201ENST00000401004 416 ntBASIC18.43■□□□□ 0.54
USP3Q9Y6I4 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
USP3Q9Y6I4 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms