Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
ZNF541Q9H0D2 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
ZNF541Q9H0D2 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC21.04■□□□□ 0.96
ZNF541Q9H0D2 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC21.04■□□□□ 0.96
ZNF541Q9H0D2 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC21.04■□□□□ 0.96
ZNF541Q9H0D2 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
ZNF541Q9H0D2 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC21.04■□□□□ 0.96
ZNF541Q9H0D2 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC21.04■□□□□ 0.96
ZNF541Q9H0D2 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC21.04■□□□□ 0.96
ZNF541Q9H0D2 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC21.04■□□□□ 0.96
ZNF541Q9H0D2 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
ZNF541Q9H0D2 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC21.04■□□□□ 0.96
ZNF541Q9H0D2 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
ZNF541Q9H0D2 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
ZNF541Q9H0D2 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC21.03■□□□□ 0.96
ZNF541Q9H0D2 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
ZNF541Q9H0D2 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC21.03■□□□□ 0.96
ZNF541Q9H0D2 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
ZNF541Q9H0D2 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
ZNF541Q9H0D2 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
ZNF541Q9H0D2 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
ZNF541Q9H0D2 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC21.03■□□□□ 0.96
ZNF541Q9H0D2 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC21.03■□□□□ 0.96
ZNF541Q9H0D2 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
ZNF541Q9H0D2 AC005332.7-201ENST00000614046 2005 ntBASIC21.03■□□□□ 0.96
ZNF541Q9H0D2 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC21.03■□□□□ 0.96
ZNF541Q9H0D2 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
ZNF541Q9H0D2 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
ZNF541Q9H0D2 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
ZNF541Q9H0D2 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
ZNF541Q9H0D2 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
ZNF541Q9H0D2 EDF1-203ENST00000371649 790 ntTSL 2 BASIC21.03■□□□□ 0.96
ZNF541Q9H0D2 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
ZNF541Q9H0D2 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
ZNF541Q9H0D2 RAC2-204ENST00000406508 893 ntTSL 5 BASIC21.03■□□□□ 0.96
ZNF541Q9H0D2 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC21.03■□□□□ 0.96
ZNF541Q9H0D2 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC21.03■□□□□ 0.96
ZNF541Q9H0D2 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
ZNF541Q9H0D2 AP005018.1-201ENST00000525475 301 ntBASIC21.03■□□□□ 0.96
ZNF541Q9H0D2 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
ZNF541Q9H0D2 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC21.03■□□□□ 0.96
ZNF541Q9H0D2 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
ZNF541Q9H0D2 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
ZNF541Q9H0D2 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC21.02■□□□□ 0.96
ZNF541Q9H0D2 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
ZNF541Q9H0D2 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
ZNF541Q9H0D2 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
ZNF541Q9H0D2 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
ZNF541Q9H0D2 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
ZNF541Q9H0D2 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
ZNF541Q9H0D2 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
ZNF541Q9H0D2 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC21.02■□□□□ 0.96
ZNF541Q9H0D2 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC21.02■□□□□ 0.96
ZNF541Q9H0D2 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
ZNF541Q9H0D2 TUBB3P1-201ENST00000405796 1332 ntBASIC21.02■□□□□ 0.96
ZNF541Q9H0D2 AL590787.1-201ENST00000568856 1315 ntBASIC21.02■□□□□ 0.96
ZNF541Q9H0D2 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
ZNF541Q9H0D2 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
ZNF541Q9H0D2 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
ZNF541Q9H0D2 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.95
ZNF541Q9H0D2 AC002056.1-201ENST00000395613 760 ntBASIC21.02■□□□□ 0.95
ZNF541Q9H0D2 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC21.02■□□□□ 0.95
ZNF541Q9H0D2 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC21.02■□□□□ 0.95
ZNF541Q9H0D2 GPS2P2-201ENST00000430745 888 ntBASIC21.02■□□□□ 0.95
ZNF541Q9H0D2 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.95
ZNF541Q9H0D2 SPDYE11-202ENST00000450699 704 ntBASIC21.02■□□□□ 0.95
ZNF541Q9H0D2 KLF2P3-201ENST00000451977 1087 ntBASIC21.02■□□□□ 0.95
ZNF541Q9H0D2 AC069335.1-201ENST00000489972 472 ntBASIC21.02■□□□□ 0.95
ZNF541Q9H0D2 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC21.02■□□□□ 0.95
ZNF541Q9H0D2 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
ZNF541Q9H0D2 AC126763.1-201ENST00000552015 2118 ntBASIC21.02■□□□□ 0.95
ZNF541Q9H0D2 RPL28-209ENST00000560055 670 ntTSL 3 BASIC21.02■□□□□ 0.95
ZNF541Q9H0D2 SPDYE9P-201ENST00000570642 692 ntBASIC21.02■□□□□ 0.95
ZNF541Q9H0D2 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC21.02■□□□□ 0.95
ZNF541Q9H0D2 CECR7-204ENST00000609932 568 ntTSL 2 BASIC21.02■□□□□ 0.95
ZNF541Q9H0D2 SPDYE10P-202ENST00000612005 668 ntBASIC21.02■□□□□ 0.95
ZNF541Q9H0D2 SPDYE8P-202ENST00000612377 668 ntBASIC21.02■□□□□ 0.95
ZNF541Q9H0D2 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
ZNF541Q9H0D2 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
ZNF541Q9H0D2 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
ZNF541Q9H0D2 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC21.01■□□□□ 0.95
ZNF541Q9H0D2 KRT18P32-201ENST00000424695 1287 ntBASIC21.01■□□□□ 0.95
ZNF541Q9H0D2 AL671277.1-201ENST00000429656 993 ntBASIC21.01■□□□□ 0.95
ZNF541Q9H0D2 AL592309.1-201ENST00000443127 649 ntBASIC21.01■□□□□ 0.95
ZNF541Q9H0D2 AC079140.1-201ENST00000508039 487 ntBASIC21.01■□□□□ 0.95
ZNF541Q9H0D2 DUX4L17-201ENST00000557360 1267 ntBASIC21.01■□□□□ 0.95
ZNF541Q9H0D2 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC21.01■□□□□ 0.95
ZNF541Q9H0D2 AC008761.3-201ENST00000624803 892 ntBASIC21.01■□□□□ 0.95
ZNF541Q9H0D2 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
ZNF541Q9H0D2 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
ZNF541Q9H0D2 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
ZNF541Q9H0D2 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
ZNF541Q9H0D2 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
ZNF541Q9H0D2 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC21■□□□□ 0.95
ZNF541Q9H0D2 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC21■□□□□ 0.95
ZNF541Q9H0D2 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
ZNF541Q9H0D2 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
ZNF541Q9H0D2 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC21■□□□□ 0.95
ZNF541Q9H0D2 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC21■□□□□ 0.95
ZNF541Q9H0D2 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 80.5 ms