Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC18.08■□□□□ 0.49
TRIM56Q9BRZ2 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.49
TRIM56Q9BRZ2 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC18.08■□□□□ 0.49
TRIM56Q9BRZ2 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
TRIM56Q9BRZ2 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC18.08■□□□□ 0.49
TRIM56Q9BRZ2 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
TRIM56Q9BRZ2 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
TRIM56Q9BRZ2 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
TRIM56Q9BRZ2 KRT8P47-201ENST00000604727 1398 ntBASIC18.08■□□□□ 0.49
TRIM56Q9BRZ2 AL391807.1-203ENST00000604392 2365 ntBASIC18.08■□□□□ 0.48
TRIM56Q9BRZ2 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC18.08■□□□□ 0.48
TRIM56Q9BRZ2 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
TRIM56Q9BRZ2 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
TRIM56Q9BRZ2 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
TRIM56Q9BRZ2 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
TRIM56Q9BRZ2 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
TRIM56Q9BRZ2 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC18.08■□□□□ 0.48
TRIM56Q9BRZ2 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
TRIM56Q9BRZ2 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC18.08■□□□□ 0.48
TRIM56Q9BRZ2 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC18.08■□□□□ 0.48
TRIM56Q9BRZ2 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC18.08■□□□□ 0.48
TRIM56Q9BRZ2 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
TRIM56Q9BRZ2 AC011558.1-201ENST00000623459 338 ntBASIC18.08■□□□□ 0.48
TRIM56Q9BRZ2 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
TRIM56Q9BRZ2 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
TRIM56Q9BRZ2 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
TRIM56Q9BRZ2 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.48
TRIM56Q9BRZ2 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
TRIM56Q9BRZ2 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
TRIM56Q9BRZ2 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
TRIM56Q9BRZ2 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
TRIM56Q9BRZ2 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.48
TRIM56Q9BRZ2 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
TRIM56Q9BRZ2 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM56Q9BRZ2 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC18.07■□□□□ 0.48
TRIM56Q9BRZ2 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM56Q9BRZ2 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM56Q9BRZ2 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM56Q9BRZ2 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM56Q9BRZ2 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM56Q9BRZ2 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM56Q9BRZ2 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC18.07■□□□□ 0.48
TRIM56Q9BRZ2 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM56Q9BRZ2 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
TRIM56Q9BRZ2 HES2-202ENST00000377836 507 ntTSL 2 BASIC18.07■□□□□ 0.48
TRIM56Q9BRZ2 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC18.07■□□□□ 0.48
TRIM56Q9BRZ2 AC092597.1-201ENST00000487352 616 ntBASIC18.07■□□□□ 0.48
TRIM56Q9BRZ2 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM56Q9BRZ2 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC18.07■□□□□ 0.48
TRIM56Q9BRZ2 AC139887.4-201ENST00000607877 719 ntBASIC18.07■□□□□ 0.48
TRIM56Q9BRZ2 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
TRIM56Q9BRZ2 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM56Q9BRZ2 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM56Q9BRZ2 REXO1L11P-201ENST00000620964 1927 ntBASIC18.07■□□□□ 0.48
TRIM56Q9BRZ2 NF2-208ENST00000403435 2568 ntTSL 5 BASIC18.07■□□□□ 0.48
TRIM56Q9BRZ2 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
TRIM56Q9BRZ2 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC18.07■□□□□ 0.48
TRIM56Q9BRZ2 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM56Q9BRZ2 CROCCP2-202ENST00000412962 2773 ntBASIC18.07■□□□□ 0.48
TRIM56Q9BRZ2 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM56Q9BRZ2 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM56Q9BRZ2 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
TRIM56Q9BRZ2 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM56Q9BRZ2 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM56Q9BRZ2 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC18.06■□□□□ 0.48
TRIM56Q9BRZ2 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRIM56Q9BRZ2 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
TRIM56Q9BRZ2 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC18.06■□□□□ 0.48
TRIM56Q9BRZ2 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
TRIM56Q9BRZ2 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC18.06■□□□□ 0.48
TRIM56Q9BRZ2 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRIM56Q9BRZ2 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRIM56Q9BRZ2 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TRIM56Q9BRZ2 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRIM56Q9BRZ2 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC18.06■□□□□ 0.48
TRIM56Q9BRZ2 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TRIM56Q9BRZ2 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC18.06■□□□□ 0.48
TRIM56Q9BRZ2 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
TRIM56Q9BRZ2 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRIM56Q9BRZ2 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC18.06■□□□□ 0.48
TRIM56Q9BRZ2 LINC00304-203ENST00000565008 1864 ntBASIC18.06■□□□□ 0.48
TRIM56Q9BRZ2 TERF1P1-201ENST00000311003 1181 ntBASIC18.06■□□□□ 0.48
TRIM56Q9BRZ2 TMPOP1-202ENST00000424642 1267 ntBASIC18.06■□□□□ 0.48
TRIM56Q9BRZ2 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRIM56Q9BRZ2 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC18.06■□□□□ 0.48
TRIM56Q9BRZ2 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC18.06■□□□□ 0.48
TRIM56Q9BRZ2 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC18.06■□□□□ 0.48
TRIM56Q9BRZ2 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRIM56Q9BRZ2 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC18.06■□□□□ 0.48
TRIM56Q9BRZ2 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC18.06■□□□□ 0.48
TRIM56Q9BRZ2 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
TRIM56Q9BRZ2 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRIM56Q9BRZ2 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRIM56Q9BRZ2 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TRIM56Q9BRZ2 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRIM56Q9BRZ2 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRIM56Q9BRZ2 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TRIM56Q9BRZ2 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
TRIM56Q9BRZ2 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRIM56Q9BRZ2 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms