Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
TTC28Q96AY4 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
TTC28Q96AY4 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC17.75■□□□□ 0.43
TTC28Q96AY4 PWWP2AP1-201ENST00000429776 2273 ntBASIC17.75■□□□□ 0.43
TTC28Q96AY4 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC17.75■□□□□ 0.43
TTC28Q96AY4 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC17.75■□□□□ 0.43
TTC28Q96AY4 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
TTC28Q96AY4 SPCS2P4-201ENST00000436160 681 ntBASIC17.75■□□□□ 0.43
TTC28Q96AY4 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC17.75■□□□□ 0.43
TTC28Q96AY4 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC17.75■□□□□ 0.43
TTC28Q96AY4 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
TTC28Q96AY4 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC17.75■□□□□ 0.43
TTC28Q96AY4 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
TTC28Q96AY4 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
TTC28Q96AY4 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TTC28Q96AY4 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC17.74■□□□□ 0.43
TTC28Q96AY4 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC17.74■□□□□ 0.43
TTC28Q96AY4 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
TTC28Q96AY4 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
TTC28Q96AY4 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC17.74■□□□□ 0.43
TTC28Q96AY4 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
TTC28Q96AY4 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TTC28Q96AY4 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
TTC28Q96AY4 FXNP2-201ENST00000411625 547 ntBASIC17.74■□□□□ 0.43
TTC28Q96AY4 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC17.74■□□□□ 0.43
TTC28Q96AY4 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TTC28Q96AY4 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TTC28Q96AY4 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TTC28Q96AY4 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
TTC28Q96AY4 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC17.74■□□□□ 0.43
TTC28Q96AY4 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC17.74■□□□□ 0.43
TTC28Q96AY4 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC17.74■□□□□ 0.43
TTC28Q96AY4 AC008494.3-201ENST00000606615 944 ntBASIC17.74■□□□□ 0.43
TTC28Q96AY4 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TTC28Q96AY4 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC17.74■□□□□ 0.43
TTC28Q96AY4 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TTC28Q96AY4 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TTC28Q96AY4 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TTC28Q96AY4 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC17.74■□□□□ 0.43
TTC28Q96AY4 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TTC28Q96AY4 KRT223P-202ENST00000449164 1292 ntBASIC17.74■□□□□ 0.43
TTC28Q96AY4 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC17.74■□□□□ 0.43
TTC28Q96AY4 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
TTC28Q96AY4 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC17.74■□□□□ 0.43
TTC28Q96AY4 MPI-209ENST00000564003 1195 ntTSL 2 BASIC17.74■□□□□ 0.43
TTC28Q96AY4 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC17.74■□□□□ 0.43
TTC28Q96AY4 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TTC28Q96AY4 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TTC28Q96AY4 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TTC28Q96AY4 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC17.74■□□□□ 0.43
TTC28Q96AY4 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
TTC28Q96AY4 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
TTC28Q96AY4 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TTC28Q96AY4 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TTC28Q96AY4 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
TTC28Q96AY4 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC17.73■□□□□ 0.43
TTC28Q96AY4 ALG1L8P-201ENST00000533887 760 ntBASIC17.73■□□□□ 0.43
TTC28Q96AY4 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC17.73■□□□□ 0.43
TTC28Q96AY4 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC17.73■□□□□ 0.43
TTC28Q96AY4 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC17.73■□□□□ 0.43
TTC28Q96AY4 CD7-202ENST00000578509 925 ntTSL 3 BASIC17.73■□□□□ 0.43
TTC28Q96AY4 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC17.73■□□□□ 0.43
TTC28Q96AY4 CHCHD2P3-201ENST00000603038 451 ntBASIC17.73■□□□□ 0.43
TTC28Q96AY4 AC097637.2-201ENST00000624096 1997 ntBASIC17.73■□□□□ 0.43
TTC28Q96AY4 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC17.73■□□□□ 0.43
TTC28Q96AY4 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC17.73■□□□□ 0.43
TTC28Q96AY4 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC17.73■□□□□ 0.43
TTC28Q96AY4 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
TTC28Q96AY4 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
TTC28Q96AY4 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC17.73■□□□□ 0.43
TTC28Q96AY4 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
TTC28Q96AY4 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TTC28Q96AY4 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
TTC28Q96AY4 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
TTC28Q96AY4 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC17.73■□□□□ 0.43
TTC28Q96AY4 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TTC28Q96AY4 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
TTC28Q96AY4 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TTC28Q96AY4 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC17.72■□□□□ 0.43
TTC28Q96AY4 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TTC28Q96AY4 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TTC28Q96AY4 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TTC28Q96AY4 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TTC28Q96AY4 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TTC28Q96AY4 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TTC28Q96AY4 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
TTC28Q96AY4 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
TTC28Q96AY4 AC234783.1-201ENST00000441761 496 ntBASIC17.72■□□□□ 0.43
TTC28Q96AY4 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TTC28Q96AY4 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC17.72■□□□□ 0.43
TTC28Q96AY4 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC17.72■□□□□ 0.43
TTC28Q96AY4 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
TTC28Q96AY4 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC17.72■□□□□ 0.43
TTC28Q96AY4 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
TTC28Q96AY4 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
TTC28Q96AY4 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
TTC28Q96AY4 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC17.72■□□□□ 0.43
TTC28Q96AY4 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
TTC28Q96AY4 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC17.72■□□□□ 0.43
TTC28Q96AY4 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms