Protein–RNA interactions for Protein: Q8IVM0

CCDC50, Coiled-coil domain-containing protein 50, humanhuman

Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC50Q8IVM0 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC50Q8IVM0 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC50Q8IVM0 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
CCDC50Q8IVM0 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC50Q8IVM0 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC50Q8IVM0 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC50Q8IVM0 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC50Q8IVM0 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC50Q8IVM0 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC50Q8IVM0 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC18.72■□□□□ 0.59
CCDC50Q8IVM0 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC18.72■□□□□ 0.59
CCDC50Q8IVM0 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC50Q8IVM0 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC50Q8IVM0 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC50Q8IVM0 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC50Q8IVM0 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC18.72■□□□□ 0.59
CCDC50Q8IVM0 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
CCDC50Q8IVM0 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC18.72■□□□□ 0.59
CCDC50Q8IVM0 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC18.72■□□□□ 0.59
CCDC50Q8IVM0 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC18.72■□□□□ 0.59
CCDC50Q8IVM0 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
CCDC50Q8IVM0 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC18.72■□□□□ 0.59
CCDC50Q8IVM0 AL023973.1-201ENST00000624619 620 ntBASIC18.72■□□□□ 0.59
CCDC50Q8IVM0 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC18.72■□□□□ 0.59
CCDC50Q8IVM0 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC18.72■□□□□ 0.59
CCDC50Q8IVM0 AD000864.1-201ENST00000624076 2295 ntBASIC18.72■□□□□ 0.59
CCDC50Q8IVM0 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
CCDC50Q8IVM0 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC18.72■□□□□ 0.59
CCDC50Q8IVM0 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
CCDC50Q8IVM0 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC18.72■□□□□ 0.59
CCDC50Q8IVM0 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
CCDC50Q8IVM0 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC50Q8IVM0 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC50Q8IVM0 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC18.72■□□□□ 0.59
CCDC50Q8IVM0 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC50Q8IVM0 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC50Q8IVM0 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC50Q8IVM0 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
CCDC50Q8IVM0 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC18.72■□□□□ 0.59
CCDC50Q8IVM0 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC18.72■□□□□ 0.59
CCDC50Q8IVM0 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC18.71■□□□□ 0.59
CCDC50Q8IVM0 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC50Q8IVM0 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC50Q8IVM0 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC50Q8IVM0 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC50Q8IVM0 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC18.71■□□□□ 0.59
CCDC50Q8IVM0 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC50Q8IVM0 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC50Q8IVM0 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC50Q8IVM0 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC50Q8IVM0 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC50Q8IVM0 CD70-202ENST00000423145 881 ntTSL 2 BASIC18.71■□□□□ 0.59
CCDC50Q8IVM0 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC18.71■□□□□ 0.59
CCDC50Q8IVM0 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC50Q8IVM0 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC18.71■□□□□ 0.59
CCDC50Q8IVM0 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC18.71■□□□□ 0.59
CCDC50Q8IVM0 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC50Q8IVM0 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC50Q8IVM0 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC50Q8IVM0 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC50Q8IVM0 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC50Q8IVM0 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC50Q8IVM0 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC50Q8IVM0 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC50Q8IVM0 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC50Q8IVM0 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC50Q8IVM0 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC50Q8IVM0 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC50Q8IVM0 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
CCDC50Q8IVM0 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
CCDC50Q8IVM0 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC50Q8IVM0 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
CCDC50Q8IVM0 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC18.7■□□□□ 0.58
CCDC50Q8IVM0 AC087499.1-201ENST00000418141 1075 ntBASIC18.7■□□□□ 0.58
CCDC50Q8IVM0 LIN28AP1-201ENST00000429574 405 ntBASIC18.7■□□□□ 0.58
CCDC50Q8IVM0 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC18.7■□□□□ 0.58
CCDC50Q8IVM0 ATP5G1P1-201ENST00000448724 379 ntBASIC18.7■□□□□ 0.58
CCDC50Q8IVM0 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC18.7■□□□□ 0.58
CCDC50Q8IVM0 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC18.7■□□□□ 0.58
CCDC50Q8IVM0 RPS20-210ENST00000523936 899 ntTSL 2 BASIC18.7■□□□□ 0.58
CCDC50Q8IVM0 DUT-205ENST00000558813 769 ntTSL 2 BASIC18.7■□□□□ 0.58
CCDC50Q8IVM0 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC18.7■□□□□ 0.58
CCDC50Q8IVM0 AC145285.6-201ENST00000604632 637 ntBASIC18.7■□□□□ 0.58
CCDC50Q8IVM0 AC140113.3-201ENST00000605663 199 ntBASIC18.7■□□□□ 0.58
CCDC50Q8IVM0 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC18.7■□□□□ 0.58
CCDC50Q8IVM0 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC18.7■□□□□ 0.58
CCDC50Q8IVM0 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC18.7■□□□□ 0.58
CCDC50Q8IVM0 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC18.7■□□□□ 0.58
CCDC50Q8IVM0 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
CCDC50Q8IVM0 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC50Q8IVM0 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC50Q8IVM0 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
CCDC50Q8IVM0 HARS-201ENST00000307633 1780 ntTSL 2 BASIC18.7■□□□□ 0.58
CCDC50Q8IVM0 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
CCDC50Q8IVM0 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC50Q8IVM0 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC50Q8IVM0 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
CCDC50Q8IVM0 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC50Q8IVM0 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
CCDC50Q8IVM0 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms