Protein–RNA interactions for Protein: Q6PD62

CTR9, RNA polymerase-associated protein CTR9 homolog, humanhuman

Predictions only

Length 1,173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTR9Q6PD62 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC21■□□□□ 0.95
CTR9Q6PD62 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CTR9Q6PD62 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
CTR9Q6PD62 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC21■□□□□ 0.95
CTR9Q6PD62 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC21■□□□□ 0.95
CTR9Q6PD62 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
CTR9Q6PD62 AC019129.2-201ENST00000609837 1235 ntBASIC21■□□□□ 0.95
CTR9Q6PD62 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC21■□□□□ 0.95
CTR9Q6PD62 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
CTR9Q6PD62 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC21■□□□□ 0.95
CTR9Q6PD62 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC21■□□□□ 0.95
CTR9Q6PD62 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CTR9Q6PD62 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
CTR9Q6PD62 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC20.99■□□□□ 0.95
CTR9Q6PD62 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
CTR9Q6PD62 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CTR9Q6PD62 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC20.99■□□□□ 0.95
CTR9Q6PD62 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
CTR9Q6PD62 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CTR9Q6PD62 KRT18P67-201ENST00000432816 1264 ntBASIC20.99■□□□□ 0.95
CTR9Q6PD62 AC018712.1-201ENST00000455767 687 ntBASIC20.99■□□□□ 0.95
CTR9Q6PD62 RNPS1P1-201ENST00000507437 918 ntBASIC20.99■□□□□ 0.95
CTR9Q6PD62 AL662844.1-201ENST00000546340 181 ntBASIC20.99■□□□□ 0.95
CTR9Q6PD62 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC20.99■□□□□ 0.95
CTR9Q6PD62 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CTR9Q6PD62 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CTR9Q6PD62 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CTR9Q6PD62 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC20.99■□□□□ 0.95
CTR9Q6PD62 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CTR9Q6PD62 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CTR9Q6PD62 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CTR9Q6PD62 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC20.99■□□□□ 0.95
CTR9Q6PD62 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CTR9Q6PD62 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CTR9Q6PD62 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CTR9Q6PD62 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
CTR9Q6PD62 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
CTR9Q6PD62 BX276092.7-203ENST00000637198 1536 ntBASIC20.99■□□□□ 0.95
CTR9Q6PD62 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CTR9Q6PD62 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
CTR9Q6PD62 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CTR9Q6PD62 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC20.98■□□□□ 0.95
CTR9Q6PD62 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CTR9Q6PD62 AL356309.3-201ENST00000624132 1934 ntBASIC20.98■□□□□ 0.95
CTR9Q6PD62 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC20.98■□□□□ 0.95
CTR9Q6PD62 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CTR9Q6PD62 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC20.98■□□□□ 0.95
CTR9Q6PD62 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC20.98■□□□□ 0.95
CTR9Q6PD62 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CTR9Q6PD62 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC20.98■□□□□ 0.95
CTR9Q6PD62 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC20.98■□□□□ 0.95
CTR9Q6PD62 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CTR9Q6PD62 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC20.98■□□□□ 0.95
CTR9Q6PD62 MED22-202ENST00000371999 987 ntTSL 3 BASIC20.98■□□□□ 0.95
CTR9Q6PD62 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
CTR9Q6PD62 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
CTR9Q6PD62 HIST2H3DP1-201ENST00000401004 416 ntBASIC20.98■□□□□ 0.95
CTR9Q6PD62 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
CTR9Q6PD62 HNRNPDP1-201ENST00000439535 754 ntBASIC20.98■□□□□ 0.95
CTR9Q6PD62 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
CTR9Q6PD62 AC021087.4-201ENST00000563761 564 ntBASIC20.98■□□□□ 0.95
CTR9Q6PD62 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC20.98■□□□□ 0.95
CTR9Q6PD62 NKAPP1-205ENST00000585790 367 ntBASIC20.98■□□□□ 0.95
CTR9Q6PD62 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
CTR9Q6PD62 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CTR9Q6PD62 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CTR9Q6PD62 AL353593.2-201ENST00000602529 1483 ntBASIC20.98■□□□□ 0.95
CTR9Q6PD62 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
CTR9Q6PD62 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
CTR9Q6PD62 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC20.98■□□□□ 0.95
CTR9Q6PD62 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC20.98■□□□□ 0.95
CTR9Q6PD62 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
CTR9Q6PD62 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC20.98■□□□□ 0.95
CTR9Q6PD62 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CTR9Q6PD62 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CTR9Q6PD62 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC20.97■□□□□ 0.95
CTR9Q6PD62 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CTR9Q6PD62 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CTR9Q6PD62 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CTR9Q6PD62 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CTR9Q6PD62 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC20.97■□□□□ 0.95
CTR9Q6PD62 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CTR9Q6PD62 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CTR9Q6PD62 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC20.97■□□□□ 0.95
CTR9Q6PD62 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CTR9Q6PD62 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC20.97■□□□□ 0.95
CTR9Q6PD62 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CTR9Q6PD62 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CTR9Q6PD62 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CTR9Q6PD62 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC20.97■□□□□ 0.95
CTR9Q6PD62 TLE1-202ENST00000376484 666 ntTSL 3 BASIC20.97■□□□□ 0.95
CTR9Q6PD62 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CTR9Q6PD62 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CTR9Q6PD62 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CTR9Q6PD62 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC20.97■□□□□ 0.95
CTR9Q6PD62 SCARNA2-201ENST00000458748 420 ntBASIC20.97■□□□□ 0.95
CTR9Q6PD62 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CTR9Q6PD62 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CTR9Q6PD62 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CTR9Q6PD62 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms