Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
COL7A1Q02388 BASP1P1-201ENST00000430708 665 ntBASIC12.55□□□□□ -0.4
COL7A1Q02388 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC12.55□□□□□ -0.4
COL7A1Q02388 U91328.1-201ENST00000437528 223 ntBASIC12.55□□□□□ -0.4
COL7A1Q02388 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC12.55□□□□□ -0.4
COL7A1Q02388 COX11-202ENST00000571584 1108 ntTSL 2 BASIC12.55□□□□□ -0.4
COL7A1Q02388 ACTL9-202ENST00000612068 1252 ntBASIC12.55□□□□□ -0.4
COL7A1Q02388 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC12.54□□□□□ -0.4
COL7A1Q02388 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
COL7A1Q02388 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
COL7A1Q02388 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC12.54□□□□□ -0.4
COL7A1Q02388 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
COL7A1Q02388 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
COL7A1Q02388 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC12.54□□□□□ -0.4
COL7A1Q02388 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC12.54□□□□□ -0.4
COL7A1Q02388 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
COL7A1Q02388 PTCHD3P3-201ENST00000403073 906 ntBASIC12.54□□□□□ -0.4
COL7A1Q02388 AC092580.3-201ENST00000430932 139 ntBASIC12.54□□□□□ -0.4
COL7A1Q02388 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC12.54□□□□□ -0.4
COL7A1Q02388 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
COL7A1Q02388 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC12.54□□□□□ -0.4
COL7A1Q02388 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC12.54□□□□□ -0.4
COL7A1Q02388 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
COL7A1Q02388 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
COL7A1Q02388 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC12.54□□□□□ -0.4
COL7A1Q02388 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC12.54□□□□□ -0.4
COL7A1Q02388 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
COL7A1Q02388 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
COL7A1Q02388 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC12.54□□□□□ -0.4
COL7A1Q02388 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC12.54□□□□□ -0.4
COL7A1Q02388 AC097637.2-201ENST00000624096 1997 ntBASIC12.54□□□□□ -0.4
COL7A1Q02388 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
COL7A1Q02388 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC12.54□□□□□ -0.4
COL7A1Q02388 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC12.54□□□□□ -0.4
COL7A1Q02388 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
COL7A1Q02388 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
COL7A1Q02388 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC12.54□□□□□ -0.4
COL7A1Q02388 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
COL7A1Q02388 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC12.54□□□□□ -0.4
COL7A1Q02388 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
COL7A1Q02388 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC12.54□□□□□ -0.4
COL7A1Q02388 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC12.54□□□□□ -0.4
COL7A1Q02388 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
COL7A1Q02388 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
COL7A1Q02388 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC12.53□□□□□ -0.4
COL7A1Q02388 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC12.53□□□□□ -0.4
COL7A1Q02388 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL7A1Q02388 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC12.53□□□□□ -0.4
COL7A1Q02388 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
COL7A1Q02388 GOLGA6L11P-201ENST00000417252 1298 ntBASIC12.53□□□□□ -0.4
COL7A1Q02388 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC12.53□□□□□ -0.4
COL7A1Q02388 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC12.53□□□□□ -0.4
COL7A1Q02388 RPS2P32-201ENST00000439199 892 ntBASIC12.53□□□□□ -0.4
COL7A1Q02388 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC12.53□□□□□ -0.4
COL7A1Q02388 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
COL7A1Q02388 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
COL7A1Q02388 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC12.53□□□□□ -0.4
COL7A1Q02388 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC12.53□□□□□ -0.4
COL7A1Q02388 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC12.53□□□□□ -0.4
COL7A1Q02388 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC12.53□□□□□ -0.4
COL7A1Q02388 AL662799.1-202ENST00000614205 422 ntBASIC12.53□□□□□ -0.4
COL7A1Q02388 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC12.53□□□□□ -0.4
COL7A1Q02388 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
COL7A1Q02388 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL7A1Q02388 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC12.53□□□□□ -0.4
COL7A1Q02388 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL7A1Q02388 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL7A1Q02388 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
COL7A1Q02388 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
COL7A1Q02388 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL7A1Q02388 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL7A1Q02388 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
COL7A1Q02388 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL7A1Q02388 BAD-207ENST00000544785 525 ntTSL 3 BASIC12.53□□□□□ -0.4
COL7A1Q02388 PHGDH-209ENST00000641074 1780 ntBASIC12.53□□□□□ -0.4
COL7A1Q02388 CU639417.3-201ENST00000624240 1404 ntBASIC12.53□□□□□ -0.4
COL7A1Q02388 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
COL7A1Q02388 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC12.53□□□□□ -0.4
COL7A1Q02388 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
COL7A1Q02388 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC12.53□□□□□ -0.4
COL7A1Q02388 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
COL7A1Q02388 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL7A1Q02388 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC12.53□□□□□ -0.4
COL7A1Q02388 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
COL7A1Q02388 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC12.53□□□□□ -0.4
COL7A1Q02388 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
COL7A1Q02388 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC12.53□□□□□ -0.4
COL7A1Q02388 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC12.52□□□□□ -0.4
COL7A1Q02388 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
COL7A1Q02388 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
COL7A1Q02388 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC12.52□□□□□ -0.4
COL7A1Q02388 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
COL7A1Q02388 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
COL7A1Q02388 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC12.52□□□□□ -0.4
COL7A1Q02388 AL355306.1-201ENST00000415580 579 ntBASIC12.52□□□□□ -0.4
COL7A1Q02388 SPTLC1P1-201ENST00000447199 261 ntBASIC12.52□□□□□ -0.4
COL7A1Q02388 GMCL1P1-201ENST00000463439 1581 ntBASIC12.52□□□□□ -0.4
COL7A1Q02388 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC12.52□□□□□ -0.4
COL7A1Q02388 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC12.52□□□□□ -0.4
COL7A1Q02388 AC243562.1-201ENST00000560672 389 ntBASIC12.52□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms