Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC18.65■□□□□ 0.58
RTN3O95197 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RTN3O95197 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
RTN3O95197 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RTN3O95197 AP005117.1-201ENST00000584346 1413 ntBASIC18.65■□□□□ 0.58
RTN3O95197 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RTN3O95197 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
RTN3O95197 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
RTN3O95197 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
RTN3O95197 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
RTN3O95197 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
RTN3O95197 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
RTN3O95197 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RTN3O95197 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RTN3O95197 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
RTN3O95197 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RTN3O95197 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC18.64■□□□□ 0.57
RTN3O95197 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RTN3O95197 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RTN3O95197 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
RTN3O95197 COX5BP2-201ENST00000392354 334 ntBASIC18.64■□□□□ 0.57
RTN3O95197 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC18.64■□□□□ 0.57
RTN3O95197 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC18.64■□□□□ 0.57
RTN3O95197 AL662844.1-201ENST00000546340 181 ntBASIC18.64■□□□□ 0.57
RTN3O95197 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC18.64■□□□□ 0.57
RTN3O95197 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC18.64■□□□□ 0.57
RTN3O95197 MTDHP3-201ENST00000594186 672 ntBASIC18.64■□□□□ 0.57
RTN3O95197 AC064862.7-201ENST00000604520 867 ntBASIC18.64■□□□□ 0.57
RTN3O95197 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RTN3O95197 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC18.64■□□□□ 0.57
RTN3O95197 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RTN3O95197 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC18.64■□□□□ 0.57
RTN3O95197 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RTN3O95197 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC18.64■□□□□ 0.57
RTN3O95197 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
RTN3O95197 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC18.64■□□□□ 0.57
RTN3O95197 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RTN3O95197 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
RTN3O95197 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RTN3O95197 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC18.64■□□□□ 0.57
RTN3O95197 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
RTN3O95197 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RTN3O95197 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
RTN3O95197 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RTN3O95197 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
RTN3O95197 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC18.63■□□□□ 0.57
RTN3O95197 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RTN3O95197 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC18.63■□□□□ 0.57
RTN3O95197 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC18.63■□□□□ 0.57
RTN3O95197 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC18.63■□□□□ 0.57
RTN3O95197 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RTN3O95197 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RTN3O95197 SOD2-201ENST00000337404 991 ntTSL 2 BASIC18.63■□□□□ 0.57
RTN3O95197 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RTN3O95197 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC18.63■□□□□ 0.57
RTN3O95197 AC103564.2-201ENST00000432853 1299 ntBASIC18.63■□□□□ 0.57
RTN3O95197 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RTN3O95197 PON3-205ENST00000451904 1053 ntTSL 3 BASIC18.63■□□□□ 0.57
RTN3O95197 SCARNA2-201ENST00000458748 420 ntBASIC18.63■□□□□ 0.57
RTN3O95197 AC009078.2-202ENST00000463353 338 ntBASIC18.63■□□□□ 0.57
RTN3O95197 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
RTN3O95197 MNT-208ENST00000575394 606 ntTSL 4 BASIC18.63■□□□□ 0.57
RTN3O95197 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
RTN3O95197 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC18.63■□□□□ 0.57
RTN3O95197 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
RTN3O95197 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
RTN3O95197 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RTN3O95197 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
RTN3O95197 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
RTN3O95197 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC18.63■□□□□ 0.57
RTN3O95197 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC18.63■□□□□ 0.57
RTN3O95197 AC124067.4-201ENST00000519691 2379 ntBASIC18.63■□□□□ 0.57
RTN3O95197 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
RTN3O95197 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RTN3O95197 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC18.63■□□□□ 0.57
RTN3O95197 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC18.63■□□□□ 0.57
RTN3O95197 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RTN3O95197 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
RTN3O95197 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
RTN3O95197 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RTN3O95197 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RTN3O95197 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
RTN3O95197 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RTN3O95197 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
RTN3O95197 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC18.62■□□□□ 0.57
RTN3O95197 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RTN3O95197 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RTN3O95197 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
RTN3O95197 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
RTN3O95197 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RTN3O95197 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
RTN3O95197 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC18.62■□□□□ 0.57
RTN3O95197 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC18.62■□□□□ 0.57
RTN3O95197 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC18.62■□□□□ 0.57
RTN3O95197 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RTN3O95197 DDX43P3-201ENST00000441064 443 ntBASIC18.62■□□□□ 0.57
RTN3O95197 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC18.62■□□□□ 0.57
RTN3O95197 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RTN3O95197 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RTN3O95197 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms