Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC15.87■□□□□ 0.13
COL6A6A6NMZ7 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
COL6A6A6NMZ7 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL6A6A6NMZ7 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC15.87■□□□□ 0.13
COL6A6A6NMZ7 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL6A6A6NMZ7 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL6A6A6NMZ7 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL6A6A6NMZ7 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC15.86■□□□□ 0.13
COL6A6A6NMZ7 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL6A6A6NMZ7 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL6A6A6NMZ7 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
COL6A6A6NMZ7 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL6A6A6NMZ7 RAC2-204ENST00000406508 893 ntTSL 5 BASIC15.86■□□□□ 0.13
COL6A6A6NMZ7 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC15.86■□□□□ 0.13
COL6A6A6NMZ7 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC15.86■□□□□ 0.13
COL6A6A6NMZ7 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC15.86■□□□□ 0.13
COL6A6A6NMZ7 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC15.86■□□□□ 0.13
COL6A6A6NMZ7 IFT20-216ENST00000588477 774 ntTSL 5 BASIC15.86■□□□□ 0.13
COL6A6A6NMZ7 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC15.86■□□□□ 0.13
COL6A6A6NMZ7 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC15.86■□□□□ 0.13
COL6A6A6NMZ7 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
COL6A6A6NMZ7 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC15.86■□□□□ 0.13
COL6A6A6NMZ7 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
COL6A6A6NMZ7 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC15.86■□□□□ 0.13
COL6A6A6NMZ7 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC15.86■□□□□ 0.13
COL6A6A6NMZ7 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
COL6A6A6NMZ7 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
COL6A6A6NMZ7 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC15.86■□□□□ 0.13
COL6A6A6NMZ7 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL6A6A6NMZ7 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
COL6A6A6NMZ7 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL6A6A6NMZ7 MIR943-201ENST00000401286 94 ntBASIC15.85■□□□□ 0.13
COL6A6A6NMZ7 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC15.85■□□□□ 0.13
COL6A6A6NMZ7 GPR53P-205ENST00000457298 1084 ntBASIC15.85■□□□□ 0.13
COL6A6A6NMZ7 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC15.85■□□□□ 0.13
COL6A6A6NMZ7 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL6A6A6NMZ7 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
COL6A6A6NMZ7 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL6A6A6NMZ7 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC15.85■□□□□ 0.13
COL6A6A6NMZ7 MYLKP1-201ENST00000509077 1580 ntBASIC15.85■□□□□ 0.13
COL6A6A6NMZ7 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL6A6A6NMZ7 MIR1909-201ENST00000411312 80 ntBASIC15.85■□□□□ 0.13
COL6A6A6NMZ7 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC15.85■□□□□ 0.13
COL6A6A6NMZ7 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC15.85■□□□□ 0.13
COL6A6A6NMZ7 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC15.85■□□□□ 0.13
COL6A6A6NMZ7 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC15.85■□□□□ 0.13
COL6A6A6NMZ7 HILS1-202ENST00000545329 423 ntBASIC15.85■□□□□ 0.13
COL6A6A6NMZ7 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC15.85■□□□□ 0.13
COL6A6A6NMZ7 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC15.85■□□□□ 0.13
COL6A6A6NMZ7 AL132655.2-201ENST00000596276 594 ntBASIC15.85■□□□□ 0.13
COL6A6A6NMZ7 AC116407.2-201ENST00000613639 860 ntBASIC15.85■□□□□ 0.13
COL6A6A6NMZ7 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
COL6A6A6NMZ7 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL6A6A6NMZ7 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC15.85■□□□□ 0.13
COL6A6A6NMZ7 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC15.85■□□□□ 0.13
COL6A6A6NMZ7 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC15.85■□□□□ 0.13
COL6A6A6NMZ7 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL6A6A6NMZ7 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC15.85■□□□□ 0.13
COL6A6A6NMZ7 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC15.85■□□□□ 0.13
COL6A6A6NMZ7 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
COL6A6A6NMZ7 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC15.85■□□□□ 0.13
COL6A6A6NMZ7 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL6A6A6NMZ7 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL6A6A6NMZ7 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL6A6A6NMZ7 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL6A6A6NMZ7 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL6A6A6NMZ7 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
COL6A6A6NMZ7 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL6A6A6NMZ7 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
COL6A6A6NMZ7 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL6A6A6NMZ7 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC15.84■□□□□ 0.13
COL6A6A6NMZ7 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC15.84■□□□□ 0.13
COL6A6A6NMZ7 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC15.84■□□□□ 0.13
COL6A6A6NMZ7 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL6A6A6NMZ7 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
COL6A6A6NMZ7 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC15.84■□□□□ 0.13
COL6A6A6NMZ7 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC15.84■□□□□ 0.13
COL6A6A6NMZ7 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC15.84■□□□□ 0.13
COL6A6A6NMZ7 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL6A6A6NMZ7 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL6A6A6NMZ7 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL6A6A6NMZ7 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
COL6A6A6NMZ7 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
COL6A6A6NMZ7 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL6A6A6NMZ7 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
COL6A6A6NMZ7 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC15.84■□□□□ 0.13
COL6A6A6NMZ7 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC15.84■□□□□ 0.13
COL6A6A6NMZ7 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC15.84■□□□□ 0.13
COL6A6A6NMZ7 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC15.84■□□□□ 0.13
COL6A6A6NMZ7 IGHV3-72-202ENST00000621503 303 ntBASIC15.84■□□□□ 0.13
COL6A6A6NMZ7 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
COL6A6A6NMZ7 POLI-202ENST00000406285 2030 ntTSL 2 BASIC15.84■□□□□ 0.13
COL6A6A6NMZ7 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
COL6A6A6NMZ7 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC15.84■□□□□ 0.13
COL6A6A6NMZ7 AC132938.6-201ENST00000623828 1655 ntBASIC15.84■□□□□ 0.13
COL6A6A6NMZ7 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
COL6A6A6NMZ7 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC15.83■□□□□ 0.13
COL6A6A6NMZ7 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC15.83■□□□□ 0.13
COL6A6A6NMZ7 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.13
COL6A6A6NMZ7 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms