Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
CCDC88BA6NC98 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC30.38■■■□□ 2.45
CCDC88BA6NC98 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
CCDC88BA6NC98 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC30.38■■■□□ 2.45
CCDC88BA6NC98 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC30.38■■■□□ 2.45
CCDC88BA6NC98 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC30.38■■■□□ 2.45
CCDC88BA6NC98 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC30.38■■■□□ 2.45
CCDC88BA6NC98 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC30.38■■■□□ 2.45
CCDC88BA6NC98 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
CCDC88BA6NC98 ENSA-206ENST00000361631 725 ntTSL 2 BASIC30.38■■■□□ 2.45
CCDC88BA6NC98 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
CCDC88BA6NC98 AL390955.2-201ENST00000603032 514 ntBASIC30.38■■■□□ 2.45
CCDC88BA6NC98 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
CCDC88BA6NC98 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
CCDC88BA6NC98 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
CCDC88BA6NC98 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC30.37■■■□□ 2.45
CCDC88BA6NC98 AL020996.1-203ENST00000536896 2307 ntBASIC30.37■■■□□ 2.45
CCDC88BA6NC98 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
CCDC88BA6NC98 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC30.37■■■□□ 2.45
CCDC88BA6NC98 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC30.37■■■□□ 2.45
CCDC88BA6NC98 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
CCDC88BA6NC98 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
CCDC88BA6NC98 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC30.37■■■□□ 2.45
CCDC88BA6NC98 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
CCDC88BA6NC98 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC30.37■■■□□ 2.45
CCDC88BA6NC98 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
CCDC88BA6NC98 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC30.37■■■□□ 2.45
CCDC88BA6NC98 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC30.37■■■□□ 2.45
CCDC88BA6NC98 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC30.37■■■□□ 2.45
CCDC88BA6NC98 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
CCDC88BA6NC98 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC30.37■■■□□ 2.45
CCDC88BA6NC98 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
CCDC88BA6NC98 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
CCDC88BA6NC98 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
CCDC88BA6NC98 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
CCDC88BA6NC98 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
CCDC88BA6NC98 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC30.36■■■□□ 2.45
CCDC88BA6NC98 NEK7-201ENST00000367383 586 ntTSL 2 BASIC30.36■■■□□ 2.45
CCDC88BA6NC98 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC30.36■■■□□ 2.45
CCDC88BA6NC98 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC30.36■■■□□ 2.45
CCDC88BA6NC98 AC107918.2-201ENST00000530817 355 ntBASIC30.36■■■□□ 2.45
CCDC88BA6NC98 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC30.36■■■□□ 2.45
CCDC88BA6NC98 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC30.36■■■□□ 2.45
CCDC88BA6NC98 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC30.36■■■□□ 2.45
CCDC88BA6NC98 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC30.36■■■□□ 2.45
CCDC88BA6NC98 USP49-202ENST00000373010 2446 ntTSL 5 BASIC30.35■■■□□ 2.45
CCDC88BA6NC98 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC30.35■■■□□ 2.45
CCDC88BA6NC98 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
CCDC88BA6NC98 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC30.35■■■□□ 2.45
CCDC88BA6NC98 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC30.35■■■□□ 2.45
CCDC88BA6NC98 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC30.35■■■□□ 2.45
CCDC88BA6NC98 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC30.35■■■□□ 2.45
CCDC88BA6NC98 AL135999.2-201ENST00000622438 1686 ntBASIC30.35■■■□□ 2.45
CCDC88BA6NC98 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC30.35■■■□□ 2.45
CCDC88BA6NC98 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC30.35■■■□□ 2.45
CCDC88BA6NC98 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC30.35■■■□□ 2.45
CCDC88BA6NC98 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC30.35■■■□□ 2.45
CCDC88BA6NC98 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC30.35■■■□□ 2.45
CCDC88BA6NC98 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
CCDC88BA6NC98 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
CCDC88BA6NC98 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
CCDC88BA6NC98 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC30.35■■■□□ 2.45
CCDC88BA6NC98 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC30.35■■■□□ 2.45
CCDC88BA6NC98 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC30.35■■■□□ 2.45
CCDC88BA6NC98 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
CCDC88BA6NC98 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC30.34■■■□□ 2.45
CCDC88BA6NC98 REXO1L11P-201ENST00000620964 1927 ntBASIC30.34■■■□□ 2.45
CCDC88BA6NC98 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC30.34■■■□□ 2.45
CCDC88BA6NC98 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC30.34■■■□□ 2.45
CCDC88BA6NC98 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
CCDC88BA6NC98 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC30.34■■■□□ 2.45
CCDC88BA6NC98 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC30.34■■■□□ 2.45
CCDC88BA6NC98 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC30.34■■■□□ 2.45
CCDC88BA6NC98 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC30.34■■■□□ 2.45
CCDC88BA6NC98 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
CCDC88BA6NC98 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
CCDC88BA6NC98 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC30.34■■■□□ 2.45
CCDC88BA6NC98 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC30.34■■■□□ 2.45
CCDC88BA6NC98 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
CCDC88BA6NC98 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
CCDC88BA6NC98 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
CCDC88BA6NC98 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC30.33■■■□□ 2.45
CCDC88BA6NC98 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
CCDC88BA6NC98 AMT-250ENST00000637682 1823 ntTSL 5 BASIC30.33■■■□□ 2.45
CCDC88BA6NC98 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
CCDC88BA6NC98 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
CCDC88BA6NC98 AL355306.1-201ENST00000415580 579 ntBASIC30.33■■■□□ 2.45
CCDC88BA6NC98 AL627223.1-201ENST00000416693 442 ntBASIC30.33■■■□□ 2.45
CCDC88BA6NC98 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC30.33■■■□□ 2.45
CCDC88BA6NC98 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC30.33■■■□□ 2.45
CCDC88BA6NC98 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
CCDC88BA6NC98 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC30.33■■■□□ 2.45
CCDC88BA6NC98 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
CCDC88BA6NC98 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
CCDC88BA6NC98 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC30.33■■■□□ 2.45
CCDC88BA6NC98 REXO1L9P-201ENST00000604264 2108 ntBASIC30.33■■■□□ 2.45
CCDC88BA6NC98 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
CCDC88BA6NC98 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC30.32■■■□□ 2.44
CCDC88BA6NC98 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
CCDC88BA6NC98 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC30.32■■■□□ 2.44
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms