Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC14.36□□□□□ -0.11
FOXA2Q9Y261 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
FOXA2Q9Y261 MIR1224-201ENST00000408193 85 ntBASIC14.36□□□□□ -0.11
FOXA2Q9Y261 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC14.36□□□□□ -0.11
FOXA2Q9Y261 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
FOXA2Q9Y261 RMI2-205ENST00000576027 818 ntTSL 2 BASIC14.36□□□□□ -0.11
FOXA2Q9Y261 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC14.36□□□□□ -0.11
FOXA2Q9Y261 NTF6B-201ENST00000591913 560 ntBASIC14.36□□□□□ -0.11
FOXA2Q9Y261 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC14.36□□□□□ -0.11
FOXA2Q9Y261 LINC01451-201ENST00000623792 534 ntBASIC14.36□□□□□ -0.11
FOXA2Q9Y261 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC14.36□□□□□ -0.11
FOXA2Q9Y261 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
FOXA2Q9Y261 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC14.36□□□□□ -0.11
FOXA2Q9Y261 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
FOXA2Q9Y261 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC14.36□□□□□ -0.11
FOXA2Q9Y261 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
FOXA2Q9Y261 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
FOXA2Q9Y261 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
FOXA2Q9Y261 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
FOXA2Q9Y261 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC14.36□□□□□ -0.11
FOXA2Q9Y261 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC14.36□□□□□ -0.11
FOXA2Q9Y261 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
FOXA2Q9Y261 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC14.36□□□□□ -0.11
FOXA2Q9Y261 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
FOXA2Q9Y261 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC14.36□□□□□ -0.11
FOXA2Q9Y261 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC14.36□□□□□ -0.11
FOXA2Q9Y261 AL391807.1-203ENST00000604392 2365 ntBASIC14.36□□□□□ -0.11
FOXA2Q9Y261 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC14.35□□□□□ -0.11
FOXA2Q9Y261 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
FOXA2Q9Y261 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
FOXA2Q9Y261 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
FOXA2Q9Y261 LINC00602-201ENST00000629776 2065 ntBASIC14.35□□□□□ -0.11
FOXA2Q9Y261 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
FOXA2Q9Y261 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
FOXA2Q9Y261 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC14.35□□□□□ -0.11
FOXA2Q9Y261 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC14.35□□□□□ -0.11
FOXA2Q9Y261 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
FOXA2Q9Y261 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC14.35□□□□□ -0.11
FOXA2Q9Y261 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC14.35□□□□□ -0.11
FOXA2Q9Y261 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
FOXA2Q9Y261 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC14.35□□□□□ -0.11
FOXA2Q9Y261 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
FOXA2Q9Y261 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC14.35□□□□□ -0.11
FOXA2Q9Y261 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC14.35□□□□□ -0.11
FOXA2Q9Y261 AC087388.1-201ENST00000571370 1112 ntBASIC14.35□□□□□ -0.11
FOXA2Q9Y261 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC14.35□□□□□ -0.11
FOXA2Q9Y261 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC14.35□□□□□ -0.11
FOXA2Q9Y261 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC14.35□□□□□ -0.11
FOXA2Q9Y261 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC14.35□□□□□ -0.11
FOXA2Q9Y261 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC14.35□□□□□ -0.11
FOXA2Q9Y261 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
FOXA2Q9Y261 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC14.35□□□□□ -0.11
FOXA2Q9Y261 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
FOXA2Q9Y261 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
FOXA2Q9Y261 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
FOXA2Q9Y261 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
FOXA2Q9Y261 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
FOXA2Q9Y261 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
FOXA2Q9Y261 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
FOXA2Q9Y261 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC14.35□□□□□ -0.11
FOXA2Q9Y261 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC14.35□□□□□ -0.11
FOXA2Q9Y261 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
FOXA2Q9Y261 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC14.35□□□□□ -0.11
FOXA2Q9Y261 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
FOXA2Q9Y261 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
FOXA2Q9Y261 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
FOXA2Q9Y261 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
FOXA2Q9Y261 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC14.35□□□□□ -0.11
FOXA2Q9Y261 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
FOXA2Q9Y261 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
FOXA2Q9Y261 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
FOXA2Q9Y261 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
FOXA2Q9Y261 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
FOXA2Q9Y261 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
FOXA2Q9Y261 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
FOXA2Q9Y261 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC14.34□□□□□ -0.11
FOXA2Q9Y261 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
FOXA2Q9Y261 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC14.34□□□□□ -0.11
FOXA2Q9Y261 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC14.34□□□□□ -0.11
FOXA2Q9Y261 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
FOXA2Q9Y261 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
FOXA2Q9Y261 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC14.34□□□□□ -0.11
FOXA2Q9Y261 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
FOXA2Q9Y261 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC14.34□□□□□ -0.11
FOXA2Q9Y261 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
FOXA2Q9Y261 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC14.34□□□□□ -0.11
FOXA2Q9Y261 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC14.34□□□□□ -0.11
FOXA2Q9Y261 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC14.34□□□□□ -0.11
FOXA2Q9Y261 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
FOXA2Q9Y261 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
FOXA2Q9Y261 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
FOXA2Q9Y261 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
FOXA2Q9Y261 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC14.34□□□□□ -0.11
FOXA2Q9Y261 HBZP1-201ENST00000354915 429 ntBASIC14.34□□□□□ -0.11
FOXA2Q9Y261 GUK1-204ENST00000366721 689 ntTSL 3 BASIC14.34□□□□□ -0.11
FOXA2Q9Y261 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
FOXA2Q9Y261 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC14.34□□□□□ -0.11
FOXA2Q9Y261 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC14.34□□□□□ -0.11
FOXA2Q9Y261 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC14.34□□□□□ -0.11
FOXA2Q9Y261 DAP-202ENST00000432074 1048 ntTSL 2 BASIC14.34□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms