Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
LINC00477Q96M19 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC13.31□□□□□ -0.28
LINC00477Q96M19 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
LINC00477Q96M19 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LINC00477Q96M19 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
LINC00477Q96M19 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LINC00477Q96M19 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
LINC00477Q96M19 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC13.31□□□□□ -0.28
LINC00477Q96M19 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC13.31□□□□□ -0.28
LINC00477Q96M19 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC13.31□□□□□ -0.28
LINC00477Q96M19 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC13.31□□□□□ -0.28
LINC00477Q96M19 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LINC00477Q96M19 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LINC00477Q96M19 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
LINC00477Q96M19 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC13.31□□□□□ -0.28
LINC00477Q96M19 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC13.31□□□□□ -0.28
LINC00477Q96M19 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC13.31□□□□□ -0.28
LINC00477Q96M19 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC13.31□□□□□ -0.28
LINC00477Q96M19 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
LINC00477Q96M19 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC13.31□□□□□ -0.28
LINC00477Q96M19 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
LINC00477Q96M19 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC13.31□□□□□ -0.28
LINC00477Q96M19 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC13.31□□□□□ -0.28
LINC00477Q96M19 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
LINC00477Q96M19 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC13.31□□□□□ -0.28
LINC00477Q96M19 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC13.31□□□□□ -0.28
LINC00477Q96M19 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
LINC00477Q96M19 AC140113.3-201ENST00000605663 199 ntBASIC13.31□□□□□ -0.28
LINC00477Q96M19 AC141257.4-201ENST00000634557 245 ntBASIC13.31□□□□□ -0.28
LINC00477Q96M19 AC136944.6-201ENST00000634818 245 ntBASIC13.31□□□□□ -0.28
LINC00477Q96M19 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
LINC00477Q96M19 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LINC00477Q96M19 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
LINC00477Q96M19 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
LINC00477Q96M19 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
LINC00477Q96M19 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC13.31□□□□□ -0.28
LINC00477Q96M19 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC13.31□□□□□ -0.28
LINC00477Q96M19 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC13.31□□□□□ -0.28
LINC00477Q96M19 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
LINC00477Q96M19 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
LINC00477Q96M19 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC13.31□□□□□ -0.28
LINC00477Q96M19 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
LINC00477Q96M19 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
LINC00477Q96M19 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
LINC00477Q96M19 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
LINC00477Q96M19 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LINC00477Q96M19 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LINC00477Q96M19 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
LINC00477Q96M19 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC13.3□□□□□ -0.28
LINC00477Q96M19 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC13.3□□□□□ -0.28
LINC00477Q96M19 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
LINC00477Q96M19 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
LINC00477Q96M19 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
LINC00477Q96M19 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC13.3□□□□□ -0.28
LINC00477Q96M19 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LINC00477Q96M19 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC13.3□□□□□ -0.28
LINC00477Q96M19 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LINC00477Q96M19 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LINC00477Q96M19 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
LINC00477Q96M19 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
LINC00477Q96M19 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LINC00477Q96M19 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
LINC00477Q96M19 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
LINC00477Q96M19 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC13.3□□□□□ -0.28
LINC00477Q96M19 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC13.3□□□□□ -0.28
LINC00477Q96M19 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC13.3□□□□□ -0.28
LINC00477Q96M19 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
LINC00477Q96M19 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC13.3□□□□□ -0.28
LINC00477Q96M19 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
LINC00477Q96M19 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC13.3□□□□□ -0.28
LINC00477Q96M19 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC13.3□□□□□ -0.28
LINC00477Q96M19 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
LINC00477Q96M19 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC13.3□□□□□ -0.28
LINC00477Q96M19 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC13.3□□□□□ -0.28
LINC00477Q96M19 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
LINC00477Q96M19 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LINC00477Q96M19 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
LINC00477Q96M19 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC13.3□□□□□ -0.28
LINC00477Q96M19 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LINC00477Q96M19 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC13.3□□□□□ -0.28
LINC00477Q96M19 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
LINC00477Q96M19 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
LINC00477Q96M19 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC13.3□□□□□ -0.28
LINC00477Q96M19 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LINC00477Q96M19 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
LINC00477Q96M19 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
LINC00477Q96M19 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
LINC00477Q96M19 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
LINC00477Q96M19 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC13.29□□□□□ -0.28
LINC00477Q96M19 AC009949.1-201ENST00000623048 1830 ntBASIC13.29□□□□□ -0.28
LINC00477Q96M19 AC011270.2-201ENST00000624293 2550 ntBASIC13.29□□□□□ -0.28
LINC00477Q96M19 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC13.29□□□□□ -0.28
LINC00477Q96M19 MED29-202ENST00000594368 1471 ntTSL 2 BASIC13.29□□□□□ -0.28
LINC00477Q96M19 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
LINC00477Q96M19 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
LINC00477Q96M19 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
LINC00477Q96M19 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
LINC00477Q96M19 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
LINC00477Q96M19 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC13.29□□□□□ -0.28
LINC00477Q96M19 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms