Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC23.09■■□□□ 1.29
RTF1Q92541 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC23.09■■□□□ 1.29
RTF1Q92541 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
RTF1Q92541 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
RTF1Q92541 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC23.09■■□□□ 1.29
RTF1Q92541 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC23.08■■□□□ 1.29
RTF1Q92541 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC23.08■■□□□ 1.29
RTF1Q92541 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
RTF1Q92541 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC23.08■■□□□ 1.29
RTF1Q92541 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC23.08■■□□□ 1.29
RTF1Q92541 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC23.08■■□□□ 1.29
RTF1Q92541 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
RTF1Q92541 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC23.08■■□□□ 1.29
RTF1Q92541 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
RTF1Q92541 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC23.08■■□□□ 1.29
RTF1Q92541 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.29
RTF1Q92541 SPDYE21P-201ENST00000413323 827 ntBASIC23.08■■□□□ 1.29
RTF1Q92541 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC23.08■■□□□ 1.29
RTF1Q92541 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC23.08■■□□□ 1.29
RTF1Q92541 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC23.08■■□□□ 1.29
RTF1Q92541 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC23.08■■□□□ 1.29
RTF1Q92541 RNF151-202ENST00000569210 853 ntTSL 2 BASIC23.08■■□□□ 1.29
RTF1Q92541 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC23.08■■□□□ 1.29
RTF1Q92541 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC23.08■■□□□ 1.29
RTF1Q92541 AC116407.3-201ENST00000623905 1129 ntBASIC23.08■■□□□ 1.29
RTF1Q92541 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
RTF1Q92541 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
RTF1Q92541 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC23.08■■□□□ 1.29
RTF1Q92541 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
RTF1Q92541 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
RTF1Q92541 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC23.08■■□□□ 1.29
RTF1Q92541 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
RTF1Q92541 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
RTF1Q92541 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC23.08■■□□□ 1.28
RTF1Q92541 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC23.08■■□□□ 1.28
RTF1Q92541 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC23.08■■□□□ 1.28
RTF1Q92541 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC23.08■■□□□ 1.28
RTF1Q92541 AC004817.3-201ENST00000602957 2129 ntBASIC23.08■■□□□ 1.28
RTF1Q92541 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
RTF1Q92541 HLA-J-201ENST00000462773 1622 ntBASIC23.08■■□□□ 1.28
RTF1Q92541 SIGLEC16-201ENST00000599858 1437 ntBASIC23.08■■□□□ 1.28
RTF1Q92541 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC23.08■■□□□ 1.28
RTF1Q92541 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC23.07■■□□□ 1.28
RTF1Q92541 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC23.07■■□□□ 1.28
RTF1Q92541 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
RTF1Q92541 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC23.07■■□□□ 1.28
RTF1Q92541 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC23.07■■□□□ 1.28
RTF1Q92541 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
RTF1Q92541 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
RTF1Q92541 AC109462.3-201ENST00000573934 613 ntBASIC23.07■■□□□ 1.28
RTF1Q92541 AC019129.2-201ENST00000609837 1235 ntBASIC23.07■■□□□ 1.28
RTF1Q92541 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC23.07■■□□□ 1.28
RTF1Q92541 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
RTF1Q92541 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
RTF1Q92541 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC23.07■■□□□ 1.28
RTF1Q92541 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC23.07■■□□□ 1.28
RTF1Q92541 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC23.07■■□□□ 1.28
RTF1Q92541 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
RTF1Q92541 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC23.07■■□□□ 1.28
RTF1Q92541 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
RTF1Q92541 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC23.06■■□□□ 1.28
RTF1Q92541 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC23.06■■□□□ 1.28
RTF1Q92541 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
RTF1Q92541 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
RTF1Q92541 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC23.06■■□□□ 1.28
RTF1Q92541 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
RTF1Q92541 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC23.06■■□□□ 1.28
RTF1Q92541 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
RTF1Q92541 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
RTF1Q92541 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC23.06■■□□□ 1.28
RTF1Q92541 AL020989.1-201ENST00000422979 469 ntBASIC23.06■■□□□ 1.28
RTF1Q92541 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC23.06■■□□□ 1.28
RTF1Q92541 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC23.06■■□□□ 1.28
RTF1Q92541 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC23.06■■□□□ 1.28
RTF1Q92541 AC107918.4-202ENST00000641623 219 ntBASIC23.06■■□□□ 1.28
RTF1Q92541 AF228730.7-201ENST00000641842 219 ntBASIC23.06■■□□□ 1.28
RTF1Q92541 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC23.06■■□□□ 1.28
RTF1Q92541 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC23.06■■□□□ 1.28
RTF1Q92541 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC23.06■■□□□ 1.28
RTF1Q92541 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
RTF1Q92541 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC23.06■■□□□ 1.28
RTF1Q92541 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC23.06■■□□□ 1.28
RTF1Q92541 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
RTF1Q92541 AC132938.5-201ENST00000624980 1813 ntBASIC23.05■■□□□ 1.28
RTF1Q92541 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
RTF1Q92541 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
RTF1Q92541 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC23.05■■□□□ 1.28
RTF1Q92541 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
RTF1Q92541 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
RTF1Q92541 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
RTF1Q92541 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
RTF1Q92541 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC23.05■■□□□ 1.28
RTF1Q92541 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC23.05■■□□□ 1.28
RTF1Q92541 FUT8-AS1-201ENST00000621019 1521 ntBASIC23.05■■□□□ 1.28
RTF1Q92541 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
RTF1Q92541 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
RTF1Q92541 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC23.05■■□□□ 1.28
RTF1Q92541 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC23.05■■□□□ 1.28
RTF1Q92541 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
RTF1Q92541 PRYP5-201ENST00000451909 266 ntBASIC23.05■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms