Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCNA1P78396 AC097637.2-201ENST00000624096 1997 ntBASIC20.07■□□□□ 0.8
CCNA1P78396 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CCNA1P78396 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC20.07■□□□□ 0.8
CCNA1P78396 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC20.07■□□□□ 0.8
CCNA1P78396 SMN2-210ENST00000511812 867 ntTSL 2 BASIC20.07■□□□□ 0.8
CCNA1P78396 CIPC-205ENST00000555437 566 ntTSL 3 BASIC20.07■□□□□ 0.8
CCNA1P78396 RIN3-211ENST00000557762 517 ntTSL 3 BASIC20.07■□□□□ 0.8
CCNA1P78396 PDPK2P-202ENST00000562415 1191 ntBASIC20.07■□□□□ 0.8
CCNA1P78396 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC20.07■□□□□ 0.8
CCNA1P78396 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC20.07■□□□□ 0.8
CCNA1P78396 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCNA1P78396 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCNA1P78396 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
CCNA1P78396 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC20.07■□□□□ 0.8
CCNA1P78396 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC20.06■□□□□ 0.8
CCNA1P78396 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC20.06■□□□□ 0.8
CCNA1P78396 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCNA1P78396 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCNA1P78396 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
CCNA1P78396 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CCNA1P78396 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCNA1P78396 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
CCNA1P78396 PTCHD3P3-201ENST00000403073 906 ntBASIC20.06■□□□□ 0.8
CCNA1P78396 IGLL3P-201ENST00000412472 434 ntBASIC20.06■□□□□ 0.8
CCNA1P78396 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC20.06■□□□□ 0.8
CCNA1P78396 CYMP-203ENST00000474680 1263 ntBASIC20.06■□□□□ 0.8
CCNA1P78396 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC20.06■□□□□ 0.8
CCNA1P78396 RFPL4AP1-201ENST00000530883 850 ntBASIC20.06■□□□□ 0.8
CCNA1P78396 CCND1-203ENST00000536559 553 ntTSL 3 BASIC20.06■□□□□ 0.8
CCNA1P78396 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CCNA1P78396 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
CCNA1P78396 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC20.06■□□□□ 0.8
CCNA1P78396 AC009336.1-201ENST00000608941 1553 ntBASIC20.06■□□□□ 0.8
CCNA1P78396 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC20.06■□□□□ 0.8
CCNA1P78396 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CCNA1P78396 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CCNA1P78396 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
CCNA1P78396 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC20.06■□□□□ 0.8
CCNA1P78396 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCNA1P78396 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC20.05■□□□□ 0.8
CCNA1P78396 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCNA1P78396 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCNA1P78396 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCNA1P78396 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC20.05■□□□□ 0.8
CCNA1P78396 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC20.05■□□□□ 0.8
CCNA1P78396 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCNA1P78396 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
CCNA1P78396 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
CCNA1P78396 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
CCNA1P78396 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
CCNA1P78396 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
CCNA1P78396 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCNA1P78396 AP002472.1-201ENST00000577490 586 ntBASIC20.05■□□□□ 0.8
CCNA1P78396 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC20.05■□□□□ 0.8
CCNA1P78396 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CCNA1P78396 AC004877.2-201ENST00000623941 599 ntBASIC20.05■□□□□ 0.8
CCNA1P78396 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC20.05■□□□□ 0.8
CCNA1P78396 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
CCNA1P78396 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCNA1P78396 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCNA1P78396 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCNA1P78396 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
CCNA1P78396 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCNA1P78396 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CCNA1P78396 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCNA1P78396 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CCNA1P78396 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CCNA1P78396 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CCNA1P78396 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCNA1P78396 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC20.04■□□□□ 0.8
CCNA1P78396 BCAR1-209ENST00000546196 1340 ntBASIC20.04■□□□□ 0.8
CCNA1P78396 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC20.04■□□□□ 0.8
CCNA1P78396 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC20.04■□□□□ 0.8
CCNA1P78396 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCNA1P78396 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCNA1P78396 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCNA1P78396 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CCNA1P78396 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC20.04■□□□□ 0.8
CCNA1P78396 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCNA1P78396 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
CCNA1P78396 MYCLP1-201ENST00000372451 1075 ntBASIC20.04■□□□□ 0.8
CCNA1P78396 AL645939.2-201ENST00000427340 991 ntBASIC20.04■□□□□ 0.8
CCNA1P78396 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCNA1P78396 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC20.04■□□□□ 0.8
CCNA1P78396 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC20.04■□□□□ 0.8
CCNA1P78396 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
CCNA1P78396 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
CCNA1P78396 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC20.04■□□□□ 0.8
CCNA1P78396 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCNA1P78396 AL353135.1-201ENST00000606729 504 ntBASIC20.04■□□□□ 0.8
CCNA1P78396 AC010507.1-201ENST00000633895 436 ntBASIC20.04■□□□□ 0.8
CCNA1P78396 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CCNA1P78396 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC20.04■□□□□ 0.8
CCNA1P78396 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
CCNA1P78396 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
CCNA1P78396 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC20.04■□□□□ 0.8
CCNA1P78396 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CCNA1P78396 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC20.04■□□□□ 0.8
CCNA1P78396 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC20.04■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms