Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CTCFP49711 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CTCFP49711 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
CTCFP49711 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC20.44■□□□□ 0.86
CTCFP49711 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC20.44■□□□□ 0.86
CTCFP49711 PARP8-206ENST00000503665 572 ntTSL 4 BASIC20.44■□□□□ 0.86
CTCFP49711 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC20.44■□□□□ 0.86
CTCFP49711 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC20.44■□□□□ 0.86
CTCFP49711 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CTCFP49711 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC20.44■□□□□ 0.86
CTCFP49711 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CTCFP49711 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
CTCFP49711 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CTCFP49711 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
CTCFP49711 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC20.44■□□□□ 0.86
CTCFP49711 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CTCFP49711 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CTCFP49711 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC20.43■□□□□ 0.86
CTCFP49711 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC20.43■□□□□ 0.86
CTCFP49711 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CTCFP49711 MIR149-201ENST00000384879 89 ntBASIC20.43■□□□□ 0.86
CTCFP49711 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC20.43■□□□□ 0.86
CTCFP49711 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC20.43■□□□□ 0.86
CTCFP49711 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
CTCFP49711 GALT-202ENST00000450095 1280 ntTSL 2 BASIC20.43■□□□□ 0.86
CTCFP49711 BAD-207ENST00000544785 525 ntTSL 3 BASIC20.43■□□□□ 0.86
CTCFP49711 AC140878.1-201ENST00000565277 250 ntBASIC20.43■□□□□ 0.86
CTCFP49711 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC20.43■□□□□ 0.86
CTCFP49711 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC20.43■□□□□ 0.86
CTCFP49711 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CTCFP49711 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
CTCFP49711 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC20.43■□□□□ 0.86
CTCFP49711 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC20.43■□□□□ 0.86
CTCFP49711 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC20.43■□□□□ 0.86
CTCFP49711 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC20.42■□□□□ 0.86
CTCFP49711 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC20.42■□□□□ 0.86
CTCFP49711 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC20.42■□□□□ 0.86
CTCFP49711 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CTCFP49711 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
CTCFP49711 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CTCFP49711 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CTCFP49711 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CTCFP49711 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CTCFP49711 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC20.42■□□□□ 0.86
CTCFP49711 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC20.42■□□□□ 0.86
CTCFP49711 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC20.42■□□□□ 0.86
CTCFP49711 TREML5P-201ENST00000421694 576 ntBASIC20.42■□□□□ 0.86
CTCFP49711 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC20.42■□□□□ 0.86
CTCFP49711 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC20.42■□□□□ 0.86
CTCFP49711 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC20.42■□□□□ 0.86
CTCFP49711 HILS1-202ENST00000545329 423 ntBASIC20.42■□□□□ 0.86
CTCFP49711 RIN3-211ENST00000557762 517 ntTSL 3 BASIC20.42■□□□□ 0.86
CTCFP49711 COQ9-214ENST00000567933 882 ntTSL 3 BASIC20.42■□□□□ 0.86
CTCFP49711 AL132655.2-201ENST00000596276 594 ntBASIC20.42■□□□□ 0.86
CTCFP49711 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC20.42■□□□□ 0.86
CTCFP49711 AC116407.2-201ENST00000613639 860 ntBASIC20.42■□□□□ 0.86
CTCFP49711 AD001527.2-201ENST00000622994 785 ntBASIC20.42■□□□□ 0.86
CTCFP49711 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC20.42■□□□□ 0.86
CTCFP49711 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC20.42■□□□□ 0.86
CTCFP49711 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC20.42■□□□□ 0.86
CTCFP49711 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC20.42■□□□□ 0.86
CTCFP49711 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CTCFP49711 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CTCFP49711 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC20.42■□□□□ 0.86
CTCFP49711 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CTCFP49711 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CTCFP49711 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
CTCFP49711 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC20.41■□□□□ 0.86
CTCFP49711 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CTCFP49711 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CTCFP49711 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CTCFP49711 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC20.41■□□□□ 0.86
CTCFP49711 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CTCFP49711 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC20.41■□□□□ 0.86
CTCFP49711 AC007967.3-201ENST00000434308 558 ntBASIC20.41■□□□□ 0.86
CTCFP49711 KRT18P65-201ENST00000439811 1286 ntBASIC20.41■□□□□ 0.86
CTCFP49711 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC20.41■□□□□ 0.86
CTCFP49711 SERBP1P5-201ENST00000510079 1181 ntBASIC20.41■□□□□ 0.86
CTCFP49711 MED16-214ENST00000617672 554 ntTSL 5 BASIC20.41■□□□□ 0.86
CTCFP49711 AP001059.3-201ENST00000619053 235 ntBASIC20.41■□□□□ 0.86
CTCFP49711 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
CTCFP49711 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
CTCFP49711 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CTCFP49711 NCF1C-201ENST00000438382 1427 ntBASIC20.41■□□□□ 0.86
CTCFP49711 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC20.41■□□□□ 0.86
CTCFP49711 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CTCFP49711 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC20.41■□□□□ 0.86
CTCFP49711 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
CTCFP49711 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CTCFP49711 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CTCFP49711 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CTCFP49711 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC20.41■□□□□ 0.86
CTCFP49711 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CTCFP49711 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
CTCFP49711 PWWP2AP1-201ENST00000429776 2273 ntBASIC20.41■□□□□ 0.86
CTCFP49711 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CTCFP49711 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CTCFP49711 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CTCFP49711 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC20.4■□□□□ 0.86
CTCFP49711 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC20.4■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms