Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC22.12■■□□□ 1.13
COL5A3P25940 LINC00628-201ENST00000628516 1289 ntBASIC22.12■■□□□ 1.13
COL5A3P25940 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
COL5A3P25940 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
COL5A3P25940 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC22.12■■□□□ 1.13
COL5A3P25940 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
COL5A3P25940 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
COL5A3P25940 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC22.12■■□□□ 1.13
COL5A3P25940 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC22.12■■□□□ 1.13
COL5A3P25940 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
COL5A3P25940 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
COL5A3P25940 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC22.11■■□□□ 1.13
COL5A3P25940 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC22.11■■□□□ 1.13
COL5A3P25940 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
COL5A3P25940 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC22.11■■□□□ 1.13
COL5A3P25940 AL121761.2-201ENST00000598007 1648 ntBASIC22.11■■□□□ 1.13
COL5A3P25940 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC22.11■■□□□ 1.13
COL5A3P25940 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
COL5A3P25940 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC22.11■■□□□ 1.13
COL5A3P25940 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC22.11■■□□□ 1.13
COL5A3P25940 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC22.11■■□□□ 1.13
COL5A3P25940 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC22.11■■□□□ 1.13
COL5A3P25940 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
COL5A3P25940 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC22.11■■□□□ 1.13
COL5A3P25940 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
COL5A3P25940 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC22.11■■□□□ 1.13
COL5A3P25940 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
COL5A3P25940 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC22.11■■□□□ 1.13
COL5A3P25940 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC22.11■■□□□ 1.13
COL5A3P25940 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC22.11■■□□□ 1.13
COL5A3P25940 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC22.11■■□□□ 1.13
COL5A3P25940 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC22.11■■□□□ 1.13
COL5A3P25940 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
COL5A3P25940 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
COL5A3P25940 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
COL5A3P25940 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
COL5A3P25940 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC22.1■■□□□ 1.13
COL5A3P25940 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC22.1■■□□□ 1.13
COL5A3P25940 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
COL5A3P25940 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
COL5A3P25940 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
COL5A3P25940 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
COL5A3P25940 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC22.1■■□□□ 1.13
COL5A3P25940 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC22.1■■□□□ 1.13
COL5A3P25940 FAM86GP-201ENST00000448322 971 ntBASIC22.1■■□□□ 1.13
COL5A3P25940 TIMM8BP1-201ENST00000452384 211 ntBASIC22.1■■□□□ 1.13
COL5A3P25940 AL135744.1-201ENST00000565098 629 ntBASIC22.1■■□□□ 1.13
COL5A3P25940 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC22.1■■□□□ 1.13
COL5A3P25940 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC22.1■■□□□ 1.13
COL5A3P25940 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC22.1■■□□□ 1.13
COL5A3P25940 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC22.1■■□□□ 1.13
COL5A3P25940 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC22.1■■□□□ 1.13
COL5A3P25940 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC22.1■■□□□ 1.13
COL5A3P25940 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC22.1■■□□□ 1.13
COL5A3P25940 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
COL5A3P25940 REXO1L11P-201ENST00000620964 1927 ntBASIC22.09■■□□□ 1.13
COL5A3P25940 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC22.09■■□□□ 1.13
COL5A3P25940 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC22.09■■□□□ 1.13
COL5A3P25940 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
COL5A3P25940 CD99-202ENST00000381180 530 ntTSL 2 BASIC22.09■■□□□ 1.13
COL5A3P25940 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC22.09■■□□□ 1.13
COL5A3P25940 SPDYE11-202ENST00000450699 704 ntBASIC22.09■■□□□ 1.13
COL5A3P25940 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC22.09■■□□□ 1.13
COL5A3P25940 AC093214.1-201ENST00000511688 1107 ntBASIC22.09■■□□□ 1.13
COL5A3P25940 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC22.09■■□□□ 1.13
COL5A3P25940 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC22.09■■□□□ 1.13
COL5A3P25940 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC22.09■■□□□ 1.13
COL5A3P25940 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC22.09■■□□□ 1.13
COL5A3P25940 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC22.09■■□□□ 1.13
COL5A3P25940 SPDYE9P-201ENST00000570642 692 ntBASIC22.09■■□□□ 1.13
COL5A3P25940 SPDYE10P-202ENST00000612005 668 ntBASIC22.09■■□□□ 1.13
COL5A3P25940 SPDYE8P-202ENST00000612377 668 ntBASIC22.09■■□□□ 1.13
COL5A3P25940 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC22.09■■□□□ 1.13
COL5A3P25940 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
COL5A3P25940 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
COL5A3P25940 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC22.09■■□□□ 1.13
COL5A3P25940 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC22.09■■□□□ 1.13
COL5A3P25940 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC22.09■■□□□ 1.13
COL5A3P25940 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
COL5A3P25940 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC22.09■■□□□ 1.13
COL5A3P25940 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC22.09■■□□□ 1.13
COL5A3P25940 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
COL5A3P25940 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC22.09■■□□□ 1.13
COL5A3P25940 DAD1-205ENST00000543337 501 ntTSL 3 BASIC22.09■■□□□ 1.13
COL5A3P25940 AC051619.7-201ENST00000568314 623 ntBASIC22.09■■□□□ 1.13
COL5A3P25940 AC239800.4-201ENST00000603712 296 ntBASIC22.09■■□□□ 1.13
COL5A3P25940 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC22.08■■□□□ 1.13
COL5A3P25940 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC22.08■■□□□ 1.13
COL5A3P25940 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
COL5A3P25940 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC22.08■■□□□ 1.13
COL5A3P25940 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
COL5A3P25940 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
COL5A3P25940 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC22.08■■□□□ 1.13
COL5A3P25940 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC22.08■■□□□ 1.13
COL5A3P25940 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC22.08■■□□□ 1.13
COL5A3P25940 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
COL5A3P25940 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC22.08■■□□□ 1.13
COL5A3P25940 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
COL5A3P25940 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC22.08■■□□□ 1.12
COL5A3P25940 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC22.08■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms