Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SSX4O60224 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SSX4O60224 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC16.14■□□□□ 0.17
SSX4O60224 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SSX4O60224 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SSX4O60224 AL671277.2-201ENST00000458060 996 ntBASIC16.14■□□□□ 0.17
SSX4O60224 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
SSX4O60224 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SSX4O60224 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC16.14■□□□□ 0.17
SSX4O60224 AC093458.2-201ENST00000623150 629 ntBASIC16.14■□□□□ 0.17
SSX4O60224 AL121956.5-201ENST00000625261 221 ntBASIC16.14■□□□□ 0.17
SSX4O60224 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC16.14■□□□□ 0.17
SSX4O60224 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
SSX4O60224 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
SSX4O60224 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SSX4O60224 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
SSX4O60224 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
SSX4O60224 LINC02199-201ENST00000506655 2702 ntBASIC16.14■□□□□ 0.17
SSX4O60224 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SSX4O60224 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC16.14■□□□□ 0.17
SSX4O60224 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
SSX4O60224 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC16.14■□□□□ 0.17
SSX4O60224 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
SSX4O60224 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
SSX4O60224 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
SSX4O60224 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SSX4O60224 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
SSX4O60224 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
SSX4O60224 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
SSX4O60224 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SSX4O60224 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC16.13■□□□□ 0.17
SSX4O60224 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC16.13■□□□□ 0.17
SSX4O60224 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC16.13■□□□□ 0.17
SSX4O60224 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
SSX4O60224 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
SSX4O60224 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
SSX4O60224 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SSX4O60224 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SSX4O60224 Telomerase-vert.1-201ENST00000363312 438 ntBASIC16.13■□□□□ 0.17
SSX4O60224 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC16.13■□□□□ 0.17
SSX4O60224 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC16.13■□□□□ 0.17
SSX4O60224 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC16.13■□□□□ 0.17
SSX4O60224 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SSX4O60224 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC16.13■□□□□ 0.17
SSX4O60224 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC16.13■□□□□ 0.17
SSX4O60224 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC16.13■□□□□ 0.17
SSX4O60224 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
SSX4O60224 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SSX4O60224 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC16.13■□□□□ 0.17
SSX4O60224 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SSX4O60224 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC16.13■□□□□ 0.17
SSX4O60224 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SSX4O60224 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SSX4O60224 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC16.13■□□□□ 0.17
SSX4O60224 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SSX4O60224 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SSX4O60224 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SSX4O60224 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SSX4O60224 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC16.13■□□□□ 0.17
SSX4O60224 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC16.13■□□□□ 0.17
SSX4O60224 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SSX4O60224 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SSX4O60224 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC16.13■□□□□ 0.17
SSX4O60224 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SSX4O60224 ANKRD18DP-204ENST00000455355 1975 ntBASIC16.13■□□□□ 0.17
SSX4O60224 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SSX4O60224 NARF-204ENST00000390006 1766 ntTSL 2 BASIC16.13■□□□□ 0.17
SSX4O60224 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SSX4O60224 IER3-202ENST00000376377 1350 ntBASIC16.13■□□□□ 0.17
SSX4O60224 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SSX4O60224 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SSX4O60224 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SSX4O60224 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SSX4O60224 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC16.12■□□□□ 0.17
SSX4O60224 KRT8P11-201ENST00000409686 1436 ntBASIC16.12■□□□□ 0.17
SSX4O60224 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SSX4O60224 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SSX4O60224 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
SSX4O60224 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC16.12■□□□□ 0.17
SSX4O60224 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SSX4O60224 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SSX4O60224 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC16.12■□□□□ 0.17
SSX4O60224 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SSX4O60224 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SSX4O60224 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
SSX4O60224 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SSX4O60224 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC16.12■□□□□ 0.17
SSX4O60224 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
SSX4O60224 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
SSX4O60224 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC16.12■□□□□ 0.17
SSX4O60224 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SSX4O60224 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SSX4O60224 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC16.12■□□□□ 0.17
SSX4O60224 KRT18P56-201ENST00000507275 550 ntBASIC16.12■□□□□ 0.17
SSX4O60224 FAM86EP-206ENST00000510506 987 ntBASIC16.12■□□□□ 0.17
SSX4O60224 PRSS44-201ENST00000515154 1146 ntBASIC16.12■□□□□ 0.17
SSX4O60224 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC16.12■□□□□ 0.17
SSX4O60224 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC16.12■□□□□ 0.17
SSX4O60224 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC16.12■□□□□ 0.17
SSX4O60224 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms