Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC18■□□□□ 0.47
HOXC11O43248 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HOXC11O43248 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC18■□□□□ 0.47
HOXC11O43248 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC18■□□□□ 0.47
HOXC11O43248 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HOXC11O43248 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HOXC11O43248 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
HOXC11O43248 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC18■□□□□ 0.47
HOXC11O43248 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC18■□□□□ 0.47
HOXC11O43248 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC18■□□□□ 0.47
HOXC11O43248 AR-207ENST00000612010 3896 ntTSL 5 BASIC17.99■□□□□ 0.47
HOXC11O43248 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HOXC11O43248 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
HOXC11O43248 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC17.99■□□□□ 0.47
HOXC11O43248 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC17.99■□□□□ 0.47
HOXC11O43248 AC090164.3-201ENST00000610780 2143 ntBASIC17.99■□□□□ 0.47
HOXC11O43248 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
HOXC11O43248 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC17.99■□□□□ 0.47
HOXC11O43248 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
HOXC11O43248 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HOXC11O43248 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
HOXC11O43248 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
HOXC11O43248 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
HOXC11O43248 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
HOXC11O43248 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HOXC11O43248 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC17.99■□□□□ 0.47
HOXC11O43248 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC17.99■□□□□ 0.47
HOXC11O43248 ARTN-206ENST00000472435 402 ntTSL 3 BASIC17.99■□□□□ 0.47
HOXC11O43248 AC002558.1-201ENST00000488906 803 ntBASIC17.99■□□□□ 0.47
HOXC11O43248 IGHV3-52-201ENST00000519770 353 ntBASIC17.99■□□□□ 0.47
HOXC11O43248 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC17.99■□□□□ 0.47
HOXC11O43248 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC17.99■□□□□ 0.47
HOXC11O43248 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HOXC11O43248 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HOXC11O43248 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HOXC11O43248 GID4-202ENST00000376345 1391 ntTSL 3 BASIC17.99■□□□□ 0.47
HOXC11O43248 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC17.99■□□□□ 0.47
HOXC11O43248 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
HOXC11O43248 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC17.99■□□□□ 0.47
HOXC11O43248 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
HOXC11O43248 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC17.99■□□□□ 0.47
HOXC11O43248 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
HOXC11O43248 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC17.98■□□□□ 0.47
HOXC11O43248 NCF1C-201ENST00000438382 1427 ntBASIC17.98■□□□□ 0.47
HOXC11O43248 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HOXC11O43248 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
HOXC11O43248 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HOXC11O43248 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC17.98■□□□□ 0.47
HOXC11O43248 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
HOXC11O43248 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HOXC11O43248 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HOXC11O43248 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
HOXC11O43248 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
HOXC11O43248 IMP4-203ENST00000409935 958 ntTSL 5 BASIC17.98■□□□□ 0.47
HOXC11O43248 ELK2BP-201ENST00000415014 1224 ntBASIC17.98■□□□□ 0.47
HOXC11O43248 CRCP-205ENST00000431089 942 ntTSL 2 BASIC17.98■□□□□ 0.47
HOXC11O43248 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC17.98■□□□□ 0.47
HOXC11O43248 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
HOXC11O43248 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC17.98■□□□□ 0.47
HOXC11O43248 HS6ST1P1-201ENST00000481504 1234 ntBASIC17.98■□□□□ 0.47
HOXC11O43248 S100A2-206ENST00000497140 697 ntTSL 2 BASIC17.98■□□□□ 0.47
HOXC11O43248 NMU-202ENST00000505262 693 ntTSL 3 BASIC17.98■□□□□ 0.47
HOXC11O43248 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HOXC11O43248 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC17.98■□□□□ 0.47
HOXC11O43248 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC17.98■□□□□ 0.47
HOXC11O43248 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC17.98■□□□□ 0.47
HOXC11O43248 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC17.98■□□□□ 0.47
HOXC11O43248 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC17.98■□□□□ 0.47
HOXC11O43248 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC17.98■□□□□ 0.47
HOXC11O43248 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
HOXC11O43248 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC17.98■□□□□ 0.47
HOXC11O43248 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
HOXC11O43248 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
HOXC11O43248 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HOXC11O43248 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
HOXC11O43248 FLJ13224-201ENST00000313737 1514 ntBASIC17.98■□□□□ 0.47
HOXC11O43248 KRT18P55-202ENST00000578578 1546 ntBASIC17.98■□□□□ 0.47
HOXC11O43248 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
HOXC11O43248 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC17.98■□□□□ 0.47
HOXC11O43248 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HOXC11O43248 AP000997.3-201ENST00000623333 2250 ntBASIC17.97■□□□□ 0.47
HOXC11O43248 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC17.97■□□□□ 0.47
HOXC11O43248 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HOXC11O43248 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC17.97■□□□□ 0.47
HOXC11O43248 HARS-201ENST00000307633 1780 ntTSL 2 BASIC17.97■□□□□ 0.47
HOXC11O43248 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HOXC11O43248 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HOXC11O43248 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC17.97■□□□□ 0.47
HOXC11O43248 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HOXC11O43248 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC17.97■□□□□ 0.47
HOXC11O43248 MIR1233-2-201ENST00000408138 82 ntBASIC17.97■□□□□ 0.47
HOXC11O43248 MIR1233-1-201ENST00000408722 82 ntBASIC17.97■□□□□ 0.47
HOXC11O43248 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC17.97■□□□□ 0.47
HOXC11O43248 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC17.97■□□□□ 0.47
HOXC11O43248 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC17.97■□□□□ 0.47
HOXC11O43248 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
HOXC11O43248 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC17.97■□□□□ 0.47
HOXC11O43248 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HOXC11O43248 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC17.97■□□□□ 0.47
HOXC11O43248 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC17.97■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms