Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VPS9D1Q9Y2B5 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC17.69■□□□□ 0.42
VPS9D1Q9Y2B5 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS9D1Q9Y2B5 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS9D1Q9Y2B5 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
VPS9D1Q9Y2B5 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC17.69■□□□□ 0.42
VPS9D1Q9Y2B5 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS9D1Q9Y2B5 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS9D1Q9Y2B5 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS9D1Q9Y2B5 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VPS9D1Q9Y2B5 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VPS9D1Q9Y2B5 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC17.69■□□□□ 0.42
VPS9D1Q9Y2B5 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS9D1Q9Y2B5 AL355312.1-201ENST00000407115 2176 ntBASIC17.69■□□□□ 0.42
VPS9D1Q9Y2B5 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VPS9D1Q9Y2B5 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC17.68■□□□□ 0.42
VPS9D1Q9Y2B5 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC17.68■□□□□ 0.42
VPS9D1Q9Y2B5 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS9D1Q9Y2B5 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS9D1Q9Y2B5 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS9D1Q9Y2B5 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS9D1Q9Y2B5 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VPS9D1Q9Y2B5 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC17.68■□□□□ 0.42
VPS9D1Q9Y2B5 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC17.68■□□□□ 0.42
VPS9D1Q9Y2B5 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC17.68■□□□□ 0.42
VPS9D1Q9Y2B5 SPDYE13P-201ENST00000445314 798 ntBASIC17.68■□□□□ 0.42
VPS9D1Q9Y2B5 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC17.68■□□□□ 0.42
VPS9D1Q9Y2B5 AL136038.3-201ENST00000561909 1096 ntBASIC17.68■□□□□ 0.42
VPS9D1Q9Y2B5 RNF126P1-202ENST00000569893 925 ntBASIC17.68■□□□□ 0.42
VPS9D1Q9Y2B5 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS9D1Q9Y2B5 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC17.68■□□□□ 0.42
VPS9D1Q9Y2B5 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS9D1Q9Y2B5 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS9D1Q9Y2B5 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VPS9D1Q9Y2B5 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC17.68■□□□□ 0.42
VPS9D1Q9Y2B5 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS9D1Q9Y2B5 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
VPS9D1Q9Y2B5 LINC00304-203ENST00000565008 1864 ntBASIC17.67■□□□□ 0.42
VPS9D1Q9Y2B5 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS9D1Q9Y2B5 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
VPS9D1Q9Y2B5 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS9D1Q9Y2B5 AL138688.1-201ENST00000624851 1594 ntBASIC17.67■□□□□ 0.42
VPS9D1Q9Y2B5 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS9D1Q9Y2B5 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VPS9D1Q9Y2B5 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC17.67■□□□□ 0.42
VPS9D1Q9Y2B5 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS9D1Q9Y2B5 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC17.67■□□□□ 0.42
VPS9D1Q9Y2B5 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VPS9D1Q9Y2B5 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC17.67■□□□□ 0.42
VPS9D1Q9Y2B5 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
VPS9D1Q9Y2B5 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
VPS9D1Q9Y2B5 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS9D1Q9Y2B5 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
VPS9D1Q9Y2B5 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS9D1Q9Y2B5 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS9D1Q9Y2B5 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS9D1Q9Y2B5 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC17.67■□□□□ 0.42
VPS9D1Q9Y2B5 UBC-206ENST00000538617 1303 ntTSL 5 BASIC17.67■□□□□ 0.42
VPS9D1Q9Y2B5 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
VPS9D1Q9Y2B5 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS9D1Q9Y2B5 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS9D1Q9Y2B5 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS9D1Q9Y2B5 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
VPS9D1Q9Y2B5 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC17.66■□□□□ 0.42
VPS9D1Q9Y2B5 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS9D1Q9Y2B5 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS9D1Q9Y2B5 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC17.66■□□□□ 0.42
VPS9D1Q9Y2B5 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC17.66■□□□□ 0.42
VPS9D1Q9Y2B5 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC17.66■□□□□ 0.42
VPS9D1Q9Y2B5 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VPS9D1Q9Y2B5 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VPS9D1Q9Y2B5 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VPS9D1Q9Y2B5 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
VPS9D1Q9Y2B5 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC17.66■□□□□ 0.42
VPS9D1Q9Y2B5 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS9D1Q9Y2B5 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS9D1Q9Y2B5 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS9D1Q9Y2B5 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC17.66■□□□□ 0.42
VPS9D1Q9Y2B5 AC096633.1-201ENST00000422446 749 ntBASIC17.66■□□□□ 0.42
VPS9D1Q9Y2B5 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC17.66■□□□□ 0.42
VPS9D1Q9Y2B5 AC090616.6-201ENST00000582640 721 ntBASIC17.66■□□□□ 0.42
VPS9D1Q9Y2B5 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC17.66■□□□□ 0.42
VPS9D1Q9Y2B5 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VPS9D1Q9Y2B5 AL121956.5-201ENST00000625261 221 ntBASIC17.66■□□□□ 0.42
VPS9D1Q9Y2B5 CFTRP2-201ENST00000634304 199 ntBASIC17.66■□□□□ 0.42
VPS9D1Q9Y2B5 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC17.66■□□□□ 0.42
VPS9D1Q9Y2B5 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS9D1Q9Y2B5 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
VPS9D1Q9Y2B5 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC17.66■□□□□ 0.42
VPS9D1Q9Y2B5 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
VPS9D1Q9Y2B5 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS9D1Q9Y2B5 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS9D1Q9Y2B5 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC17.66■□□□□ 0.42
VPS9D1Q9Y2B5 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS9D1Q9Y2B5 TBC1D3P5-201ENST00000579401 1545 ntBASIC17.66■□□□□ 0.42
VPS9D1Q9Y2B5 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS9D1Q9Y2B5 AC097374.2-201ENST00000618617 1306 ntBASIC17.66■□□□□ 0.42
VPS9D1Q9Y2B5 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS9D1Q9Y2B5 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS9D1Q9Y2B5 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms