Protein–RNA interactions for Protein: Q9UHC9

NPC1L1, Niemann-Pick C1-like protein 1, humanhuman

Predictions only

Length 1,359 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPC1L1Q9UHC9 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
NPC1L1Q9UHC9 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC23.79■■□□□ 1.4
NPC1L1Q9UHC9 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC23.79■■□□□ 1.4
NPC1L1Q9UHC9 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
NPC1L1Q9UHC9 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC23.79■■□□□ 1.4
NPC1L1Q9UHC9 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC23.78■■□□□ 1.4
NPC1L1Q9UHC9 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
NPC1L1Q9UHC9 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
NPC1L1Q9UHC9 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC23.78■■□□□ 1.4
NPC1L1Q9UHC9 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
NPC1L1Q9UHC9 PP7080-204ENST00000510714 601 ntTSL 3 BASIC23.78■■□□□ 1.4
NPC1L1Q9UHC9 STK19B-204ENST00000512515 211 ntBASIC23.78■■□□□ 1.4
NPC1L1Q9UHC9 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC23.78■■□□□ 1.4
NPC1L1Q9UHC9 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
NPC1L1Q9UHC9 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
NPC1L1Q9UHC9 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC23.78■■□□□ 1.4
NPC1L1Q9UHC9 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
NPC1L1Q9UHC9 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC23.78■■□□□ 1.4
NPC1L1Q9UHC9 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC23.78■■□□□ 1.4
NPC1L1Q9UHC9 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC23.78■■□□□ 1.4
NPC1L1Q9UHC9 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
NPC1L1Q9UHC9 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC23.78■■□□□ 1.4
NPC1L1Q9UHC9 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
NPC1L1Q9UHC9 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
NPC1L1Q9UHC9 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC23.78■■□□□ 1.4
NPC1L1Q9UHC9 SCARNA2-201ENST00000458748 420 ntBASIC23.78■■□□□ 1.4
NPC1L1Q9UHC9 RNA5SP419-201ENST00000515908 135 ntBASIC23.78■■□□□ 1.4
NPC1L1Q9UHC9 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
NPC1L1Q9UHC9 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
NPC1L1Q9UHC9 AL022326.1-202ENST00000641533 845 ntBASIC23.78■■□□□ 1.4
NPC1L1Q9UHC9 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
NPC1L1Q9UHC9 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
NPC1L1Q9UHC9 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
NPC1L1Q9UHC9 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC23.77■■□□□ 1.4
NPC1L1Q9UHC9 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
NPC1L1Q9UHC9 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
NPC1L1Q9UHC9 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
NPC1L1Q9UHC9 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC23.77■■□□□ 1.4
NPC1L1Q9UHC9 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
NPC1L1Q9UHC9 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
NPC1L1Q9UHC9 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
NPC1L1Q9UHC9 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC23.77■■□□□ 1.4
NPC1L1Q9UHC9 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
NPC1L1Q9UHC9 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC23.77■■□□□ 1.4
NPC1L1Q9UHC9 AC046185.3-201ENST00000623228 1824 ntBASIC23.77■■□□□ 1.4
NPC1L1Q9UHC9 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC23.77■■□□□ 1.4
NPC1L1Q9UHC9 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC23.77■■□□□ 1.4
NPC1L1Q9UHC9 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC23.77■■□□□ 1.4
NPC1L1Q9UHC9 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
NPC1L1Q9UHC9 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
NPC1L1Q9UHC9 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC23.77■■□□□ 1.4
NPC1L1Q9UHC9 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
NPC1L1Q9UHC9 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC23.77■■□□□ 1.4
NPC1L1Q9UHC9 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC23.77■■□□□ 1.4
NPC1L1Q9UHC9 AC021087.4-201ENST00000563761 564 ntBASIC23.77■■□□□ 1.4
NPC1L1Q9UHC9 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC23.77■■□□□ 1.4
NPC1L1Q9UHC9 SLC25A6P4-201ENST00000586535 553 ntBASIC23.77■■□□□ 1.4
NPC1L1Q9UHC9 CYGB-205ENST00000590175 830 ntTSL 3 BASIC23.77■■□□□ 1.4
NPC1L1Q9UHC9 CALM3-211ENST00000598871 561 ntTSL 4 BASIC23.77■■□□□ 1.4
NPC1L1Q9UHC9 GID4-202ENST00000376345 1391 ntTSL 3 BASIC23.77■■□□□ 1.4
NPC1L1Q9UHC9 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
NPC1L1Q9UHC9 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
NPC1L1Q9UHC9 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC23.77■■□□□ 1.39
NPC1L1Q9UHC9 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC23.77■■□□□ 1.39
NPC1L1Q9UHC9 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC23.77■■□□□ 1.39
NPC1L1Q9UHC9 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC23.76■■□□□ 1.39
NPC1L1Q9UHC9 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC23.76■■□□□ 1.39
NPC1L1Q9UHC9 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC23.76■■□□□ 1.39
NPC1L1Q9UHC9 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
NPC1L1Q9UHC9 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
NPC1L1Q9UHC9 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC23.76■■□□□ 1.39
NPC1L1Q9UHC9 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
NPC1L1Q9UHC9 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
NPC1L1Q9UHC9 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
NPC1L1Q9UHC9 SLC25A1P3-201ENST00000395415 828 ntBASIC23.76■■□□□ 1.39
NPC1L1Q9UHC9 KRT18P67-201ENST00000432816 1264 ntBASIC23.76■■□□□ 1.39
NPC1L1Q9UHC9 NKTR-203ENST00000442970 646 ntTSL 2 BASIC23.76■■□□□ 1.39
NPC1L1Q9UHC9 AC004817.3-201ENST00000602957 2129 ntBASIC23.76■■□□□ 1.39
NPC1L1Q9UHC9 LINC00896-202ENST00000609602 2128 ntBASIC23.76■■□□□ 1.39
NPC1L1Q9UHC9 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
NPC1L1Q9UHC9 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
NPC1L1Q9UHC9 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
NPC1L1Q9UHC9 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC23.75■■□□□ 1.39
NPC1L1Q9UHC9 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC23.75■■□□□ 1.39
NPC1L1Q9UHC9 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC23.75■■□□□ 1.39
NPC1L1Q9UHC9 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
NPC1L1Q9UHC9 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
NPC1L1Q9UHC9 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC23.75■■□□□ 1.39
NPC1L1Q9UHC9 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC23.75■■□□□ 1.39
NPC1L1Q9UHC9 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
NPC1L1Q9UHC9 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
NPC1L1Q9UHC9 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
NPC1L1Q9UHC9 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC23.75■■□□□ 1.39
NPC1L1Q9UHC9 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC23.75■■□□□ 1.39
NPC1L1Q9UHC9 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC23.75■■□□□ 1.39
NPC1L1Q9UHC9 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC23.75■■□□□ 1.39
NPC1L1Q9UHC9 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC23.75■■□□□ 1.39
NPC1L1Q9UHC9 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC23.75■■□□□ 1.39
NPC1L1Q9UHC9 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC23.75■■□□□ 1.39
NPC1L1Q9UHC9 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC23.75■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms