Protein–RNA interactions for Protein: Q9BSE4

HERPUD2, Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD2Q9BSE4 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC18.39■□□□□ 0.54
HERPUD2Q9BSE4 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC18.39■□□□□ 0.53
HERPUD2Q9BSE4 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC18.39■□□□□ 0.53
HERPUD2Q9BSE4 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
HERPUD2Q9BSE4 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HERPUD2Q9BSE4 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HERPUD2Q9BSE4 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
HERPUD2Q9BSE4 LYSMD4-203ENST00000378904 2122 ntBASIC18.39■□□□□ 0.53
HERPUD2Q9BSE4 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC18.39■□□□□ 0.53
HERPUD2Q9BSE4 AC068472.1-201ENST00000474589 881 ntBASIC18.39■□□□□ 0.53
HERPUD2Q9BSE4 AP003733.1-201ENST00000491725 852 ntBASIC18.39■□□□□ 0.53
HERPUD2Q9BSE4 TPM1-226ENST00000560959 925 ntTSL 2 BASIC18.39■□□□□ 0.53
HERPUD2Q9BSE4 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC18.39■□□□□ 0.53
HERPUD2Q9BSE4 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
HERPUD2Q9BSE4 AC087388.1-201ENST00000571370 1112 ntBASIC18.39■□□□□ 0.53
HERPUD2Q9BSE4 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC18.39■□□□□ 0.53
HERPUD2Q9BSE4 GXYLT1P4-201ENST00000613576 1192 ntBASIC18.39■□□□□ 0.53
HERPUD2Q9BSE4 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
HERPUD2Q9BSE4 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
HERPUD2Q9BSE4 NKILA-202ENST00000614771 2598 ntBASIC18.39■□□□□ 0.53
HERPUD2Q9BSE4 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
HERPUD2Q9BSE4 AC084018.2-201ENST00000613093 2607 ntBASIC18.39■□□□□ 0.53
HERPUD2Q9BSE4 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC18.39■□□□□ 0.53
HERPUD2Q9BSE4 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
HERPUD2Q9BSE4 AC011676.5-201ENST00000624864 2660 ntBASIC18.39■□□□□ 0.53
HERPUD2Q9BSE4 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
HERPUD2Q9BSE4 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC18.39■□□□□ 0.53
HERPUD2Q9BSE4 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
HERPUD2Q9BSE4 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HERPUD2Q9BSE4 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC18.39■□□□□ 0.53
HERPUD2Q9BSE4 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC18.38■□□□□ 0.53
HERPUD2Q9BSE4 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HERPUD2Q9BSE4 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC18.38■□□□□ 0.53
HERPUD2Q9BSE4 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC18.38■□□□□ 0.53
HERPUD2Q9BSE4 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC18.38■□□□□ 0.53
HERPUD2Q9BSE4 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
HERPUD2Q9BSE4 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC18.38■□□□□ 0.53
HERPUD2Q9BSE4 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
HERPUD2Q9BSE4 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
HERPUD2Q9BSE4 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
HERPUD2Q9BSE4 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
HERPUD2Q9BSE4 AC112907.2-201ENST00000448639 330 ntBASIC18.38■□□□□ 0.53
HERPUD2Q9BSE4 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC18.38■□□□□ 0.53
HERPUD2Q9BSE4 RNF146-204ENST00000476956 884 ntTSL 2 BASIC18.38■□□□□ 0.53
HERPUD2Q9BSE4 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC18.38■□□□□ 0.53
HERPUD2Q9BSE4 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC18.38■□□□□ 0.53
HERPUD2Q9BSE4 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC18.38■□□□□ 0.53
HERPUD2Q9BSE4 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
HERPUD2Q9BSE4 WDR6-223ENST00000627177 207 ntTSL 2 BASIC18.38■□□□□ 0.53
HERPUD2Q9BSE4 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
HERPUD2Q9BSE4 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HERPUD2Q9BSE4 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HERPUD2Q9BSE4 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
HERPUD2Q9BSE4 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
HERPUD2Q9BSE4 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
HERPUD2Q9BSE4 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
HERPUD2Q9BSE4 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
HERPUD2Q9BSE4 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
HERPUD2Q9BSE4 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HERPUD2Q9BSE4 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HERPUD2Q9BSE4 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HERPUD2Q9BSE4 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HERPUD2Q9BSE4 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
HERPUD2Q9BSE4 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HERPUD2Q9BSE4 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HERPUD2Q9BSE4 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HERPUD2Q9BSE4 MTCL1P1-201ENST00000446207 792 ntBASIC18.37■□□□□ 0.53
HERPUD2Q9BSE4 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HERPUD2Q9BSE4 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC18.37■□□□□ 0.53
HERPUD2Q9BSE4 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC18.37■□□□□ 0.53
HERPUD2Q9BSE4 AL390719.2-201ENST00000606993 987 ntBASIC18.37■□□□□ 0.53
HERPUD2Q9BSE4 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC18.37■□□□□ 0.53
HERPUD2Q9BSE4 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC18.37■□□□□ 0.53
HERPUD2Q9BSE4 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HERPUD2Q9BSE4 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HERPUD2Q9BSE4 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HERPUD2Q9BSE4 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HERPUD2Q9BSE4 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HERPUD2Q9BSE4 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC18.36■□□□□ 0.53
HERPUD2Q9BSE4 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC18.36■□□□□ 0.53
HERPUD2Q9BSE4 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HERPUD2Q9BSE4 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HERPUD2Q9BSE4 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
HERPUD2Q9BSE4 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HERPUD2Q9BSE4 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
HERPUD2Q9BSE4 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
HERPUD2Q9BSE4 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HERPUD2Q9BSE4 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
HERPUD2Q9BSE4 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC18.36■□□□□ 0.53
HERPUD2Q9BSE4 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
HERPUD2Q9BSE4 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC18.36■□□□□ 0.53
HERPUD2Q9BSE4 AC005104.2-201ENST00000427818 678 ntBASIC18.36■□□□□ 0.53
HERPUD2Q9BSE4 SAPCD2P2-201ENST00000431719 1174 ntBASIC18.36■□□□□ 0.53
HERPUD2Q9BSE4 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC18.36■□□□□ 0.53
HERPUD2Q9BSE4 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
HERPUD2Q9BSE4 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC18.36■□□□□ 0.53
HERPUD2Q9BSE4 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HERPUD2Q9BSE4 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC18.36■□□□□ 0.53
HERPUD2Q9BSE4 AC005332.3-201ENST00000589904 676 ntBASIC18.36■□□□□ 0.53
HERPUD2Q9BSE4 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC18.36■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms