Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC42Q96M95 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC19.18■□□□□ 0.66
CCDC42Q96M95 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC42Q96M95 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC42Q96M95 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC42Q96M95 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC19.18■□□□□ 0.66
CCDC42Q96M95 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC19.18■□□□□ 0.66
CCDC42Q96M95 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC42Q96M95 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC42Q96M95 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
CCDC42Q96M95 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC19.18■□□□□ 0.66
CCDC42Q96M95 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC42Q96M95 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC42Q96M95 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC19.18■□□□□ 0.66
CCDC42Q96M95 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
CCDC42Q96M95 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC19.18■□□□□ 0.66
CCDC42Q96M95 AL355075.4-201ENST00000554988 638 ntBASIC19.18■□□□□ 0.66
CCDC42Q96M95 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC42Q96M95 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC19.18■□□□□ 0.66
CCDC42Q96M95 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC42Q96M95 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC42Q96M95 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC42Q96M95 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC42Q96M95 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC42Q96M95 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC42Q96M95 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC42Q96M95 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC42Q96M95 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC42Q96M95 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC19.18■□□□□ 0.66
CCDC42Q96M95 AC124067.4-201ENST00000519691 2379 ntBASIC19.18■□□□□ 0.66
CCDC42Q96M95 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC42Q96M95 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC42Q96M95 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CCDC42Q96M95 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC42Q96M95 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC19.17■□□□□ 0.66
CCDC42Q96M95 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
CCDC42Q96M95 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
CCDC42Q96M95 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC42Q96M95 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC42Q96M95 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC19.17■□□□□ 0.66
CCDC42Q96M95 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC42Q96M95 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC42Q96M95 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
CCDC42Q96M95 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC19.17■□□□□ 0.66
CCDC42Q96M95 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC42Q96M95 Telomerase-vert.1-201ENST00000363312 438 ntBASIC19.17■□□□□ 0.66
CCDC42Q96M95 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC42Q96M95 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC19.17■□□□□ 0.66
CCDC42Q96M95 AC113404.2-201ENST00000507884 177 ntBASIC19.17■□□□□ 0.66
CCDC42Q96M95 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC19.17■□□□□ 0.66
CCDC42Q96M95 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC42Q96M95 SNX21-213ENST00000614929 587 ntTSL 5 BASIC19.17■□□□□ 0.66
CCDC42Q96M95 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC19.17■□□□□ 0.66
CCDC42Q96M95 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC19.17■□□□□ 0.66
CCDC42Q96M95 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC42Q96M95 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC42Q96M95 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
CCDC42Q96M95 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC42Q96M95 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CCDC42Q96M95 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
CCDC42Q96M95 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
CCDC42Q96M95 CYP2D8P-201ENST00000433633 1490 ntBASIC19.16■□□□□ 0.66
CCDC42Q96M95 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC19.16■□□□□ 0.66
CCDC42Q96M95 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC42Q96M95 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
CCDC42Q96M95 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC42Q96M95 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
CCDC42Q96M95 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC19.16■□□□□ 0.66
CCDC42Q96M95 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC42Q96M95 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC19.16■□□□□ 0.66
CCDC42Q96M95 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC19.16■□□□□ 0.66
CCDC42Q96M95 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC19.16■□□□□ 0.66
CCDC42Q96M95 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC19.16■□□□□ 0.66
CCDC42Q96M95 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC19.16■□□□□ 0.66
CCDC42Q96M95 AL157888.1-201ENST00000631930 593 ntBASIC19.16■□□□□ 0.66
CCDC42Q96M95 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC42Q96M95 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC19.16■□□□□ 0.66
CCDC42Q96M95 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC42Q96M95 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC42Q96M95 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
CCDC42Q96M95 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC42Q96M95 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CCDC42Q96M95 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC42Q96M95 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC42Q96M95 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC19.15■□□□□ 0.66
CCDC42Q96M95 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC42Q96M95 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
CCDC42Q96M95 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC42Q96M95 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
CCDC42Q96M95 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC42Q96M95 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC42Q96M95 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC42Q96M95 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC42Q96M95 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CCDC42Q96M95 DDX43P3-201ENST00000441064 443 ntBASIC19.15■□□□□ 0.66
CCDC42Q96M95 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC19.15■□□□□ 0.66
CCDC42Q96M95 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
CCDC42Q96M95 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC19.15■□□□□ 0.66
CCDC42Q96M95 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC19.15■□□□□ 0.66
CCDC42Q96M95 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 70.9 ms