Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 AC073648.2-201ENST00000510116 352 ntBASIC20.98■□□□□ 0.95
NKX2-3Q8TAU0 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC20.98■□□□□ 0.95
NKX2-3Q8TAU0 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC20.98■□□□□ 0.95
NKX2-3Q8TAU0 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC20.98■□□□□ 0.95
NKX2-3Q8TAU0 PRKN-208ENST00000610470 531 ntTSL 2 BASIC20.98■□□□□ 0.95
NKX2-3Q8TAU0 PRKN-209ENST00000612485 225 ntTSL 5 BASIC20.98■□□□□ 0.95
NKX2-3Q8TAU0 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC20.98■□□□□ 0.95
NKX2-3Q8TAU0 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
NKX2-3Q8TAU0 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC20.98■□□□□ 0.95
NKX2-3Q8TAU0 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC20.98■□□□□ 0.95
NKX2-3Q8TAU0 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
NKX2-3Q8TAU0 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC20.98■□□□□ 0.95
NKX2-3Q8TAU0 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NKX2-3Q8TAU0 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC20.97■□□□□ 0.95
NKX2-3Q8TAU0 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC20.97■□□□□ 0.95
NKX2-3Q8TAU0 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
NKX2-3Q8TAU0 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
NKX2-3Q8TAU0 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC20.97■□□□□ 0.95
NKX2-3Q8TAU0 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC20.97■□□□□ 0.95
NKX2-3Q8TAU0 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NKX2-3Q8TAU0 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
NKX2-3Q8TAU0 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC20.97■□□□□ 0.95
NKX2-3Q8TAU0 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
NKX2-3Q8TAU0 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
NKX2-3Q8TAU0 LITAF-211ENST00000572255 516 ntTSL 4 BASIC20.97■□□□□ 0.95
NKX2-3Q8TAU0 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC20.97■□□□□ 0.95
NKX2-3Q8TAU0 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NKX2-3Q8TAU0 MIR5100-201ENST00000579544 119 ntBASIC20.97■□□□□ 0.95
NKX2-3Q8TAU0 AC011467.2-201ENST00000598425 242 ntBASIC20.97■□□□□ 0.95
NKX2-3Q8TAU0 AC148477.8-201ENST00000624298 468 ntBASIC20.97■□□□□ 0.95
NKX2-3Q8TAU0 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
NKX2-3Q8TAU0 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
NKX2-3Q8TAU0 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
NKX2-3Q8TAU0 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NKX2-3Q8TAU0 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC20.97■□□□□ 0.95
NKX2-3Q8TAU0 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
NKX2-3Q8TAU0 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
NKX2-3Q8TAU0 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
NKX2-3Q8TAU0 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
NKX2-3Q8TAU0 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
NKX2-3Q8TAU0 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC20.97■□□□□ 0.95
NKX2-3Q8TAU0 AC134043.2-201ENST00000624206 2238 ntBASIC20.97■□□□□ 0.95
NKX2-3Q8TAU0 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NKX2-3Q8TAU0 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC20.97■□□□□ 0.95
NKX2-3Q8TAU0 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NKX2-3Q8TAU0 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
NKX2-3Q8TAU0 NME9-203ENST00000383180 2133 ntTSL 2 BASIC20.96■□□□□ 0.95
NKX2-3Q8TAU0 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC20.96■□□□□ 0.95
NKX2-3Q8TAU0 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC20.96■□□□□ 0.95
NKX2-3Q8TAU0 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NKX2-3Q8TAU0 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC20.96■□□□□ 0.95
NKX2-3Q8TAU0 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
NKX2-3Q8TAU0 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC20.96■□□□□ 0.95
NKX2-3Q8TAU0 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
NKX2-3Q8TAU0 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NKX2-3Q8TAU0 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC20.96■□□□□ 0.95
NKX2-3Q8TAU0 HARS-201ENST00000307633 1780 ntTSL 2 BASIC20.96■□□□□ 0.95
NKX2-3Q8TAU0 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC20.96■□□□□ 0.95
NKX2-3Q8TAU0 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NKX2-3Q8TAU0 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NKX2-3Q8TAU0 AC098831.1-202ENST00000438821 336 ntBASIC20.96■□□□□ 0.95
NKX2-3Q8TAU0 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC20.96■□□□□ 0.95
NKX2-3Q8TAU0 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC20.96■□□□□ 0.95
NKX2-3Q8TAU0 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
NKX2-3Q8TAU0 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC20.96■□□□□ 0.95
NKX2-3Q8TAU0 AC027796.2-201ENST00000575326 344 ntBASIC20.96■□□□□ 0.95
NKX2-3Q8TAU0 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC20.96■□□□□ 0.95
NKX2-3Q8TAU0 AL591684.3-201ENST00000605187 298 ntBASIC20.96■□□□□ 0.95
NKX2-3Q8TAU0 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC20.96■□□□□ 0.95
NKX2-3Q8TAU0 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
NKX2-3Q8TAU0 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
NKX2-3Q8TAU0 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
NKX2-3Q8TAU0 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
NKX2-3Q8TAU0 AC097374.2-201ENST00000618617 1306 ntBASIC20.96■□□□□ 0.95
NKX2-3Q8TAU0 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
NKX2-3Q8TAU0 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC20.96■□□□□ 0.95
NKX2-3Q8TAU0 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
NKX2-3Q8TAU0 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
NKX2-3Q8TAU0 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NKX2-3Q8TAU0 SIRPAP1-201ENST00000448467 1770 ntBASIC20.95■□□□□ 0.94
NKX2-3Q8TAU0 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NKX2-3Q8TAU0 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
NKX2-3Q8TAU0 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NKX2-3Q8TAU0 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC20.95■□□□□ 0.94
NKX2-3Q8TAU0 RPS2P28-201ENST00000314255 741 ntBASIC20.95■□□□□ 0.94
NKX2-3Q8TAU0 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NKX2-3Q8TAU0 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC20.95■□□□□ 0.94
NKX2-3Q8TAU0 UPF3AP3-201ENST00000420996 769 ntBASIC20.95■□□□□ 0.94
NKX2-3Q8TAU0 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC20.95■□□□□ 0.94
NKX2-3Q8TAU0 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC20.95■□□□□ 0.94
NKX2-3Q8TAU0 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC20.95■□□□□ 0.94
NKX2-3Q8TAU0 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NKX2-3Q8TAU0 AC114341.1-201ENST00000618070 349 ntBASIC20.95■□□□□ 0.94
NKX2-3Q8TAU0 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NKX2-3Q8TAU0 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
NKX2-3Q8TAU0 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC20.95■□□□□ 0.94
NKX2-3Q8TAU0 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NKX2-3Q8TAU0 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NKX2-3Q8TAU0 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NKX2-3Q8TAU0 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms