Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC20.94■□□□□ 0.94
SMC1BQ8NDV3 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
SMC1BQ8NDV3 AC099778.1-201ENST00000568593 1911 ntBASIC20.94■□□□□ 0.94
SMC1BQ8NDV3 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC20.94■□□□□ 0.94
SMC1BQ8NDV3 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SMC1BQ8NDV3 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SMC1BQ8NDV3 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SMC1BQ8NDV3 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SMC1BQ8NDV3 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SMC1BQ8NDV3 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC20.94■□□□□ 0.94
SMC1BQ8NDV3 AC002056.1-201ENST00000395613 760 ntBASIC20.94■□□□□ 0.94
SMC1BQ8NDV3 SLC25A6P5-201ENST00000435663 894 ntBASIC20.94■□□□□ 0.94
SMC1BQ8NDV3 U91328.1-201ENST00000437528 223 ntBASIC20.94■□□□□ 0.94
SMC1BQ8NDV3 AL592309.1-201ENST00000443127 649 ntBASIC20.94■□□□□ 0.94
SMC1BQ8NDV3 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC20.94■□□□□ 0.94
SMC1BQ8NDV3 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC20.94■□□□□ 0.94
SMC1BQ8NDV3 KRT8P48-201ENST00000515599 1220 ntBASIC20.94■□□□□ 0.94
SMC1BQ8NDV3 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SMC1BQ8NDV3 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC20.94■□□□□ 0.94
SMC1BQ8NDV3 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SMC1BQ8NDV3 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
SMC1BQ8NDV3 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
SMC1BQ8NDV3 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SMC1BQ8NDV3 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SMC1BQ8NDV3 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
SMC1BQ8NDV3 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
SMC1BQ8NDV3 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
SMC1BQ8NDV3 CU639417.3-201ENST00000624240 1404 ntBASIC20.94■□□□□ 0.94
SMC1BQ8NDV3 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
SMC1BQ8NDV3 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC20.94■□□□□ 0.94
SMC1BQ8NDV3 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SMC1BQ8NDV3 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
SMC1BQ8NDV3 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SMC1BQ8NDV3 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SMC1BQ8NDV3 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SMC1BQ8NDV3 AL355306.1-201ENST00000415580 579 ntBASIC20.93■□□□□ 0.94
SMC1BQ8NDV3 SERBP1P5-201ENST00000510079 1181 ntBASIC20.93■□□□□ 0.94
SMC1BQ8NDV3 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
SMC1BQ8NDV3 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC20.93■□□□□ 0.94
SMC1BQ8NDV3 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC20.93■□□□□ 0.94
SMC1BQ8NDV3 COQ9-214ENST00000567933 882 ntTSL 3 BASIC20.93■□□□□ 0.94
SMC1BQ8NDV3 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SMC1BQ8NDV3 AL158211.3-201ENST00000607385 239 ntBASIC20.93■□□□□ 0.94
SMC1BQ8NDV3 TCF3P1-201ENST00000423021 1937 ntBASIC20.93■□□□□ 0.94
SMC1BQ8NDV3 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SMC1BQ8NDV3 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
SMC1BQ8NDV3 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SMC1BQ8NDV3 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SMC1BQ8NDV3 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC20.93■□□□□ 0.94
SMC1BQ8NDV3 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SMC1BQ8NDV3 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
SMC1BQ8NDV3 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SMC1BQ8NDV3 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SMC1BQ8NDV3 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SMC1BQ8NDV3 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC20.92■□□□□ 0.94
SMC1BQ8NDV3 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SMC1BQ8NDV3 USP39-204ENST00000409766 2033 ntTSL 2 BASIC20.92■□□□□ 0.94
SMC1BQ8NDV3 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SMC1BQ8NDV3 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC20.92■□□□□ 0.94
SMC1BQ8NDV3 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC20.92■□□□□ 0.94
SMC1BQ8NDV3 AL671277.1-201ENST00000429656 993 ntBASIC20.92■□□□□ 0.94
SMC1BQ8NDV3 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC20.92■□□□□ 0.94
SMC1BQ8NDV3 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC20.92■□□□□ 0.94
SMC1BQ8NDV3 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC20.92■□□□□ 0.94
SMC1BQ8NDV3 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SMC1BQ8NDV3 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC20.92■□□□□ 0.94
SMC1BQ8NDV3 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC20.92■□□□□ 0.94
SMC1BQ8NDV3 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC20.92■□□□□ 0.94
SMC1BQ8NDV3 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
SMC1BQ8NDV3 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC20.92■□□□□ 0.94
SMC1BQ8NDV3 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SMC1BQ8NDV3 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SMC1BQ8NDV3 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
SMC1BQ8NDV3 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
SMC1BQ8NDV3 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SMC1BQ8NDV3 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC20.91■□□□□ 0.94
SMC1BQ8NDV3 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
SMC1BQ8NDV3 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SMC1BQ8NDV3 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC20.91■□□□□ 0.94
SMC1BQ8NDV3 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SMC1BQ8NDV3 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC20.91■□□□□ 0.94
SMC1BQ8NDV3 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC20.91■□□□□ 0.94
SMC1BQ8NDV3 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC20.91■□□□□ 0.94
SMC1BQ8NDV3 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC20.91■□□□□ 0.94
SMC1BQ8NDV3 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
SMC1BQ8NDV3 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SMC1BQ8NDV3 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SMC1BQ8NDV3 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC20.91■□□□□ 0.94
SMC1BQ8NDV3 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC20.91■□□□□ 0.94
SMC1BQ8NDV3 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC20.91■□□□□ 0.94
SMC1BQ8NDV3 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SMC1BQ8NDV3 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC20.91■□□□□ 0.94
SMC1BQ8NDV3 BSG-214ENST00000614867 960 ntTSL 3 BASIC20.91■□□□□ 0.94
SMC1BQ8NDV3 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC20.91■□□□□ 0.94
SMC1BQ8NDV3 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SMC1BQ8NDV3 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SMC1BQ8NDV3 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SMC1BQ8NDV3 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SMC1BQ8NDV3 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SMC1BQ8NDV3 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC20.9■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms