Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ZNF540Q8NDQ6 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ZNF540Q8NDQ6 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
ZNF540Q8NDQ6 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
ZNF540Q8NDQ6 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC16.49■□□□□ 0.23
ZNF540Q8NDQ6 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC16.49■□□□□ 0.23
ZNF540Q8NDQ6 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ZNF540Q8NDQ6 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC16.49■□□□□ 0.23
ZNF540Q8NDQ6 AL445675.2-201ENST00000620291 557 ntBASIC16.49■□□□□ 0.23
ZNF540Q8NDQ6 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
ZNF540Q8NDQ6 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
ZNF540Q8NDQ6 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC16.49■□□□□ 0.23
ZNF540Q8NDQ6 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC16.49■□□□□ 0.23
ZNF540Q8NDQ6 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ZNF540Q8NDQ6 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
ZNF540Q8NDQ6 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ZNF540Q8NDQ6 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
ZNF540Q8NDQ6 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ZNF540Q8NDQ6 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC16.49■□□□□ 0.23
ZNF540Q8NDQ6 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
ZNF540Q8NDQ6 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
ZNF540Q8NDQ6 KRT18P22-201ENST00000402024 1347 ntBASIC16.48■□□□□ 0.23
ZNF540Q8NDQ6 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC16.48■□□□□ 0.23
ZNF540Q8NDQ6 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
ZNF540Q8NDQ6 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
ZNF540Q8NDQ6 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
ZNF540Q8NDQ6 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
ZNF540Q8NDQ6 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
ZNF540Q8NDQ6 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC16.48■□□□□ 0.23
ZNF540Q8NDQ6 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
ZNF540Q8NDQ6 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC16.48■□□□□ 0.23
ZNF540Q8NDQ6 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
ZNF540Q8NDQ6 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
ZNF540Q8NDQ6 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
ZNF540Q8NDQ6 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC16.48■□□□□ 0.23
ZNF540Q8NDQ6 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
ZNF540Q8NDQ6 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC16.48■□□□□ 0.23
ZNF540Q8NDQ6 MIR1238-201ENST00000408483 83 ntBASIC16.48■□□□□ 0.23
ZNF540Q8NDQ6 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC16.48■□□□□ 0.23
ZNF540Q8NDQ6 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC16.48■□□□□ 0.23
ZNF540Q8NDQ6 FITM1-202ENST00000559294 800 ntBASIC16.48■□□□□ 0.23
ZNF540Q8NDQ6 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC16.48■□□□□ 0.23
ZNF540Q8NDQ6 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC16.48■□□□□ 0.23
ZNF540Q8NDQ6 AC131212.4-201ENST00000623606 975 ntBASIC16.48■□□□□ 0.23
ZNF540Q8NDQ6 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
ZNF540Q8NDQ6 AL109659.2-201ENST00000606809 1674 ntBASIC16.48■□□□□ 0.23
ZNF540Q8NDQ6 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
ZNF540Q8NDQ6 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC16.48■□□□□ 0.23
ZNF540Q8NDQ6 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC16.48■□□□□ 0.23
ZNF540Q8NDQ6 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
ZNF540Q8NDQ6 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC16.48■□□□□ 0.23
ZNF540Q8NDQ6 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
ZNF540Q8NDQ6 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC16.48■□□□□ 0.23
ZNF540Q8NDQ6 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
ZNF540Q8NDQ6 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
ZNF540Q8NDQ6 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
ZNF540Q8NDQ6 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
ZNF540Q8NDQ6 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
ZNF540Q8NDQ6 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC16.48■□□□□ 0.23
ZNF540Q8NDQ6 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
ZNF540Q8NDQ6 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
ZNF540Q8NDQ6 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC16.48■□□□□ 0.23
ZNF540Q8NDQ6 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
ZNF540Q8NDQ6 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
ZNF540Q8NDQ6 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
ZNF540Q8NDQ6 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
ZNF540Q8NDQ6 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
ZNF540Q8NDQ6 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
ZNF540Q8NDQ6 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
ZNF540Q8NDQ6 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
ZNF540Q8NDQ6 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
ZNF540Q8NDQ6 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
ZNF540Q8NDQ6 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
ZNF540Q8NDQ6 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
ZNF540Q8NDQ6 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC16.47■□□□□ 0.23
ZNF540Q8NDQ6 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
ZNF540Q8NDQ6 PCDHB19P-201ENST00000570871 2371 ntBASIC16.47■□□□□ 0.23
ZNF540Q8NDQ6 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC16.47■□□□□ 0.23
ZNF540Q8NDQ6 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
ZNF540Q8NDQ6 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
ZNF540Q8NDQ6 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
ZNF540Q8NDQ6 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC16.47■□□□□ 0.23
ZNF540Q8NDQ6 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
ZNF540Q8NDQ6 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
ZNF540Q8NDQ6 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
ZNF540Q8NDQ6 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC16.47■□□□□ 0.23
ZNF540Q8NDQ6 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC16.47■□□□□ 0.23
ZNF540Q8NDQ6 AP000525.1-201ENST00000608286 694 ntBASIC16.47■□□□□ 0.23
ZNF540Q8NDQ6 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC16.47■□□□□ 0.23
ZNF540Q8NDQ6 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC16.47■□□□□ 0.23
ZNF540Q8NDQ6 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
ZNF540Q8NDQ6 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC16.47■□□□□ 0.23
ZNF540Q8NDQ6 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
ZNF540Q8NDQ6 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC16.47■□□□□ 0.23
ZNF540Q8NDQ6 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
ZNF540Q8NDQ6 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC16.47■□□□□ 0.23
ZNF540Q8NDQ6 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
ZNF540Q8NDQ6 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC16.47■□□□□ 0.23
ZNF540Q8NDQ6 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
ZNF540Q8NDQ6 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms