Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC19.58■□□□□ 0.72
CCDC40Q4G0X9 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC40Q4G0X9 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.72
CCDC40Q4G0X9 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC40Q4G0X9 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
CCDC40Q4G0X9 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC40Q4G0X9 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC19.57■□□□□ 0.72
CCDC40Q4G0X9 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
CCDC40Q4G0X9 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC40Q4G0X9 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC40Q4G0X9 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC40Q4G0X9 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC19.57■□□□□ 0.72
CCDC40Q4G0X9 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC40Q4G0X9 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC40Q4G0X9 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC40Q4G0X9 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC19.57■□□□□ 0.72
CCDC40Q4G0X9 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC40Q4G0X9 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC40Q4G0X9 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC19.57■□□□□ 0.72
CCDC40Q4G0X9 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC40Q4G0X9 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC19.57■□□□□ 0.72
CCDC40Q4G0X9 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC40Q4G0X9 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC40Q4G0X9 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC40Q4G0X9 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC40Q4G0X9 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC19.57■□□□□ 0.72
CCDC40Q4G0X9 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC40Q4G0X9 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
CCDC40Q4G0X9 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
CCDC40Q4G0X9 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
CCDC40Q4G0X9 OR6D1P-203ENST00000641209 4860 ntBASIC19.57■□□□□ 0.72
CCDC40Q4G0X9 KRT8P47-201ENST00000604727 1398 ntBASIC19.57■□□□□ 0.72
CCDC40Q4G0X9 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC40Q4G0X9 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC40Q4G0X9 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC40Q4G0X9 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC40Q4G0X9 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
CCDC40Q4G0X9 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC19.56■□□□□ 0.72
CCDC40Q4G0X9 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC40Q4G0X9 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC19.56■□□□□ 0.72
CCDC40Q4G0X9 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC19.56■□□□□ 0.72
CCDC40Q4G0X9 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC40Q4G0X9 HBZP1-201ENST00000354915 429 ntBASIC19.56■□□□□ 0.72
CCDC40Q4G0X9 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
CCDC40Q4G0X9 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC40Q4G0X9 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC19.56■□□□□ 0.72
CCDC40Q4G0X9 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC40Q4G0X9 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC19.56■□□□□ 0.72
CCDC40Q4G0X9 AC009154.2-201ENST00000621177 724 ntBASIC19.56■□□□□ 0.72
CCDC40Q4G0X9 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC40Q4G0X9 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC19.56■□□□□ 0.72
CCDC40Q4G0X9 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC40Q4G0X9 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
CCDC40Q4G0X9 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC40Q4G0X9 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC19.56■□□□□ 0.72
CCDC40Q4G0X9 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC40Q4G0X9 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC40Q4G0X9 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC40Q4G0X9 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
CCDC40Q4G0X9 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC40Q4G0X9 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC40Q4G0X9 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC40Q4G0X9 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC19.55■□□□□ 0.72
CCDC40Q4G0X9 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC40Q4G0X9 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC40Q4G0X9 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC19.55■□□□□ 0.72
CCDC40Q4G0X9 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC40Q4G0X9 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC40Q4G0X9 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC40Q4G0X9 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC40Q4G0X9 IGHGP-201ENST00000390555 1178 ntBASIC19.55■□□□□ 0.72
CCDC40Q4G0X9 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC19.55■□□□□ 0.72
CCDC40Q4G0X9 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC19.55■□□□□ 0.72
CCDC40Q4G0X9 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC19.55■□□□□ 0.72
CCDC40Q4G0X9 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC19.55■□□□□ 0.72
CCDC40Q4G0X9 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC19.55■□□□□ 0.72
CCDC40Q4G0X9 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC40Q4G0X9 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC19.55■□□□□ 0.72
CCDC40Q4G0X9 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC40Q4G0X9 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CCDC40Q4G0X9 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC19.55■□□□□ 0.72
CCDC40Q4G0X9 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC19.55■□□□□ 0.72
CCDC40Q4G0X9 CEP83-AS1-201ENST00000623122 2482 ntBASIC19.54■□□□□ 0.72
CCDC40Q4G0X9 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC19.54■□□□□ 0.72
CCDC40Q4G0X9 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
CCDC40Q4G0X9 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC40Q4G0X9 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC40Q4G0X9 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC40Q4G0X9 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC40Q4G0X9 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC40Q4G0X9 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC40Q4G0X9 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC40Q4G0X9 LINC01311-201ENST00000565162 1445 ntBASIC19.54■□□□□ 0.72
CCDC40Q4G0X9 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC40Q4G0X9 MIR662-201ENST00000384847 95 ntBASIC19.54■□□□□ 0.72
CCDC40Q4G0X9 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC40Q4G0X9 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC40Q4G0X9 VENTXP5-201ENST00000523979 775 ntBASIC19.54■□□□□ 0.72
CCDC40Q4G0X9 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC19.54■□□□□ 0.72
CCDC40Q4G0X9 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC19.54■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms