Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLRN1P58418 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLRN1P58418 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC15.9■□□□□ 0.14
CLRN1P58418 BAALC-202ENST00000306391 243 ntTSL 5 BASIC15.9■□□□□ 0.14
CLRN1P58418 BAALC-204ENST00000330955 222 ntTSL 5 BASIC15.9■□□□□ 0.14
CLRN1P58418 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CLRN1P58418 AL645929.1-201ENST00000420084 975 ntBASIC15.9■□□□□ 0.14
CLRN1P58418 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC15.9■□□□□ 0.14
CLRN1P58418 DAP-202ENST00000432074 1048 ntTSL 2 BASIC15.9■□□□□ 0.14
CLRN1P58418 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC15.9■□□□□ 0.14
CLRN1P58418 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CLRN1P58418 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC15.9■□□□□ 0.14
CLRN1P58418 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC15.9■□□□□ 0.14
CLRN1P58418 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLRN1P58418 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLRN1P58418 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLRN1P58418 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
CLRN1P58418 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLRN1P58418 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLRN1P58418 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CLRN1P58418 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CLRN1P58418 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC15.9■□□□□ 0.14
CLRN1P58418 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC15.9■□□□□ 0.14
CLRN1P58418 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CLRN1P58418 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC15.89■□□□□ 0.13
CLRN1P58418 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
CLRN1P58418 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CLRN1P58418 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC15.89■□□□□ 0.13
CLRN1P58418 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
CLRN1P58418 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CLRN1P58418 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CLRN1P58418 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CLRN1P58418 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC15.89■□□□□ 0.13
CLRN1P58418 LETM1P2-201ENST00000597330 2178 ntBASIC15.89■□□□□ 0.13
CLRN1P58418 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CLRN1P58418 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CLRN1P58418 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CLRN1P58418 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CLRN1P58418 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CLRN1P58418 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
CLRN1P58418 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CLRN1P58418 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
CLRN1P58418 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
CLRN1P58418 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CLRN1P58418 AC112698.1-201ENST00000510299 916 ntBASIC15.89■□□□□ 0.13
CLRN1P58418 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC15.89■□□□□ 0.13
CLRN1P58418 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC15.89■□□□□ 0.13
CLRN1P58418 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC15.89■□□□□ 0.13
CLRN1P58418 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC15.89■□□□□ 0.13
CLRN1P58418 AL390719.2-201ENST00000606993 987 ntBASIC15.89■□□□□ 0.13
CLRN1P58418 PODN-203ENST00000395871 2744 ntTSL 5 BASIC15.89■□□□□ 0.13
CLRN1P58418 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CLRN1P58418 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CLRN1P58418 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
CLRN1P58418 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CLRN1P58418 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CLRN1P58418 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
CLRN1P58418 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
CLRN1P58418 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CLRN1P58418 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CLRN1P58418 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
CLRN1P58418 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CLRN1P58418 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
CLRN1P58418 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CLRN1P58418 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLRN1P58418 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC15.88■□□□□ 0.13
CLRN1P58418 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CLRN1P58418 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC15.88■□□□□ 0.13
CLRN1P58418 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
CLRN1P58418 LINC00896-202ENST00000609602 2128 ntBASIC15.88■□□□□ 0.13
CLRN1P58418 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLRN1P58418 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLRN1P58418 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLRN1P58418 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLRN1P58418 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC15.88■□□□□ 0.13
CLRN1P58418 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLRN1P58418 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC15.88■□□□□ 0.13
CLRN1P58418 RNF126P1-202ENST00000569893 925 ntBASIC15.88■□□□□ 0.13
CLRN1P58418 WDR6-223ENST00000627177 207 ntTSL 2 BASIC15.88■□□□□ 0.13
CLRN1P58418 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLRN1P58418 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLRN1P58418 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC15.88■□□□□ 0.13
CLRN1P58418 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC15.88■□□□□ 0.13
CLRN1P58418 UBC-206ENST00000538617 1303 ntTSL 5 BASIC15.88■□□□□ 0.13
CLRN1P58418 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLRN1P58418 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLRN1P58418 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
CLRN1P58418 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CLRN1P58418 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC15.88■□□□□ 0.13
CLRN1P58418 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
CLRN1P58418 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC15.87■□□□□ 0.13
CLRN1P58418 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC15.87■□□□□ 0.13
CLRN1P58418 AC009949.1-201ENST00000623048 1830 ntBASIC15.87■□□□□ 0.13
CLRN1P58418 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
CLRN1P58418 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC15.87■□□□□ 0.13
CLRN1P58418 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
CLRN1P58418 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
CLRN1P58418 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
CLRN1P58418 MED29-202ENST00000594368 1471 ntTSL 2 BASIC15.87■□□□□ 0.13
CLRN1P58418 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC15.87■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 59.9 ms