Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 ABBA01031674.1-201ENST00000635145 728 ntBASIC14.79□□□□□ -0.04
HOXA1P49639 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
HOXA1P49639 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
HOXA1P49639 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HOXA1P49639 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HOXA1P49639 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HOXA1P49639 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HOXA1P49639 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HOXA1P49639 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC14.79□□□□□ -0.04
HOXA1P49639 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC14.78□□□□□ -0.04
HOXA1P49639 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HOXA1P49639 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
HOXA1P49639 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC14.78□□□□□ -0.04
HOXA1P49639 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
HOXA1P49639 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HOXA1P49639 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HOXA1P49639 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HOXA1P49639 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
HOXA1P49639 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC14.78□□□□□ -0.04
HOXA1P49639 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC14.78□□□□□ -0.04
HOXA1P49639 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HOXA1P49639 AL109659.2-201ENST00000606809 1674 ntBASIC14.78□□□□□ -0.04
HOXA1P49639 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC14.78□□□□□ -0.04
HOXA1P49639 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC14.78□□□□□ -0.04
HOXA1P49639 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC14.78□□□□□ -0.04
HOXA1P49639 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
HOXA1P49639 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC14.78□□□□□ -0.04
HOXA1P49639 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HOXA1P49639 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HOXA1P49639 SNCG-201ENST00000348795 684 ntTSL 2 BASIC14.78□□□□□ -0.04
HOXA1P49639 AP000593.1-201ENST00000393668 712 ntBASIC14.78□□□□□ -0.04
HOXA1P49639 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC14.78□□□□□ -0.04
HOXA1P49639 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC14.78□□□□□ -0.04
HOXA1P49639 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC14.78□□□□□ -0.04
HOXA1P49639 CFL2-205ENST00000555765 632 ntTSL 2 BASIC14.78□□□□□ -0.04
HOXA1P49639 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC14.78□□□□□ -0.04
HOXA1P49639 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
HOXA1P49639 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HOXA1P49639 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
HOXA1P49639 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HOXA1P49639 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HOXA1P49639 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC14.78□□□□□ -0.04
HOXA1P49639 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
HOXA1P49639 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC14.78□□□□□ -0.04
HOXA1P49639 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC14.78□□□□□ -0.04
HOXA1P49639 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HOXA1P49639 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
HOXA1P49639 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HOXA1P49639 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
HOXA1P49639 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HOXA1P49639 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
HOXA1P49639 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC14.77□□□□□ -0.04
HOXA1P49639 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC14.77□□□□□ -0.04
HOXA1P49639 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
HOXA1P49639 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
HOXA1P49639 GMCL1P1-201ENST00000463439 1581 ntBASIC14.77□□□□□ -0.04
HOXA1P49639 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC14.77□□□□□ -0.04
HOXA1P49639 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
HOXA1P49639 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC14.77□□□□□ -0.04
HOXA1P49639 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
HOXA1P49639 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC14.77□□□□□ -0.04
HOXA1P49639 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
HOXA1P49639 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
HOXA1P49639 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
HOXA1P49639 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
HOXA1P49639 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
HOXA1P49639 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC14.77□□□□□ -0.04
HOXA1P49639 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HOXA1P49639 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC14.77□□□□□ -0.05
HOXA1P49639 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
HOXA1P49639 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC14.77□□□□□ -0.05
HOXA1P49639 SLC25A6P5-201ENST00000435663 894 ntBASIC14.77□□□□□ -0.05
HOXA1P49639 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC14.77□□□□□ -0.05
HOXA1P49639 FDX2-207ENST00000494368 584 ntTSL 4 BASIC14.77□□□□□ -0.05
HOXA1P49639 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC14.77□□□□□ -0.05
HOXA1P49639 AC006058.3-201ENST00000606217 1069 ntBASIC14.77□□□□□ -0.05
HOXA1P49639 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
HOXA1P49639 TBCB-214ENST00000629269 413 ntTSL 5 BASIC14.77□□□□□ -0.05
HOXA1P49639 AC073648.6-201ENST00000641589 218 ntBASIC14.77□□□□□ -0.05
HOXA1P49639 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
HOXA1P49639 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HOXA1P49639 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC14.77□□□□□ -0.05
HOXA1P49639 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC14.77□□□□□ -0.05
HOXA1P49639 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HOXA1P49639 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
HOXA1P49639 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC14.77□□□□□ -0.05
HOXA1P49639 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
HOXA1P49639 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
HOXA1P49639 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC14.77□□□□□ -0.05
HOXA1P49639 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
HOXA1P49639 FLJ13224-201ENST00000313737 1514 ntBASIC14.76□□□□□ -0.05
HOXA1P49639 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HOXA1P49639 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
HOXA1P49639 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HOXA1P49639 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
HOXA1P49639 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC14.76□□□□□ -0.05
HOXA1P49639 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC14.76□□□□□ -0.05
HOXA1P49639 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC14.76□□□□□ -0.05
HOXA1P49639 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
HOXA1P49639 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms