Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
CXCL12P48061 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC17.58■□□□□ 0.41
CXCL12P48061 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC17.58■□□□□ 0.4
CXCL12P48061 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CXCL12P48061 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CXCL12P48061 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CXCL12P48061 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC17.58■□□□□ 0.4
CXCL12P48061 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CXCL12P48061 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC17.58■□□□□ 0.4
CXCL12P48061 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC17.58■□□□□ 0.4
CXCL12P48061 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CXCL12P48061 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CXCL12P48061 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
CXCL12P48061 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CXCL12P48061 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC17.58■□□□□ 0.4
CXCL12P48061 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC17.58■□□□□ 0.4
CXCL12P48061 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC17.58■□□□□ 0.4
CXCL12P48061 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC17.58■□□□□ 0.4
CXCL12P48061 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC17.58■□□□□ 0.4
CXCL12P48061 AL353135.1-201ENST00000606729 504 ntBASIC17.58■□□□□ 0.4
CXCL12P48061 AC019129.2-201ENST00000609837 1235 ntBASIC17.58■□□□□ 0.4
CXCL12P48061 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC17.58■□□□□ 0.4
CXCL12P48061 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CXCL12P48061 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
CXCL12P48061 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
CXCL12P48061 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CXCL12P48061 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CXCL12P48061 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC17.58■□□□□ 0.4
CXCL12P48061 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CXCL12P48061 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC17.57■□□□□ 0.4
CXCL12P48061 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CXCL12P48061 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CXCL12P48061 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CXCL12P48061 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC17.57■□□□□ 0.4
CXCL12P48061 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CXCL12P48061 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC17.57■□□□□ 0.4
CXCL12P48061 HLA-DRB6-201ENST00000411500 1235 ntBASIC17.57■□□□□ 0.4
CXCL12P48061 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC17.57■□□□□ 0.4
CXCL12P48061 WBP2-203ENST00000433525 928 ntTSL 2 BASIC17.57■□□□□ 0.4
CXCL12P48061 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC17.57■□□□□ 0.4
CXCL12P48061 PAWRP1-201ENST00000451083 565 ntBASIC17.57■□□□□ 0.4
CXCL12P48061 IGHV3-52-201ENST00000519770 353 ntBASIC17.57■□□□□ 0.4
CXCL12P48061 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC17.57■□□□□ 0.4
CXCL12P48061 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC17.57■□□□□ 0.4
CXCL12P48061 RPL28-205ENST00000558131 444 ntTSL 5 BASIC17.57■□□□□ 0.4
CXCL12P48061 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC17.57■□□□□ 0.4
CXCL12P48061 AC138761.1-201ENST00000584393 385 ntBASIC17.57■□□□□ 0.4
CXCL12P48061 STK25P1-201ENST00000585406 838 ntBASIC17.57■□□□□ 0.4
CXCL12P48061 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC17.57■□□□□ 0.4
CXCL12P48061 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
CXCL12P48061 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC17.57■□□□□ 0.4
CXCL12P48061 REXO1L3P-201ENST00000622202 1288 ntBASIC17.57■□□□□ 0.4
CXCL12P48061 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CXCL12P48061 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC17.57■□□□□ 0.4
CXCL12P48061 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC17.57■□□□□ 0.4
CXCL12P48061 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CXCL12P48061 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
CXCL12P48061 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CXCL12P48061 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CXCL12P48061 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC17.56■□□□□ 0.4
CXCL12P48061 ADM-207ENST00000530439 1839 ntTSL 2 BASIC17.56■□□□□ 0.4
CXCL12P48061 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
CXCL12P48061 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CXCL12P48061 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC17.56■□□□□ 0.4
CXCL12P48061 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC17.56■□□□□ 0.4
CXCL12P48061 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
CXCL12P48061 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CXCL12P48061 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CXCL12P48061 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CXCL12P48061 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CXCL12P48061 CXCL1P1-201ENST00000502804 216 ntBASIC17.56■□□□□ 0.4
CXCL12P48061 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC17.56■□□□□ 0.4
CXCL12P48061 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC17.56■□□□□ 0.4
CXCL12P48061 AC068137.2-201ENST00000605408 478 ntBASIC17.56■□□□□ 0.4
CXCL12P48061 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CXCL12P48061 MED16-214ENST00000617672 554 ntTSL 5 BASIC17.56■□□□□ 0.4
CXCL12P48061 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CXCL12P48061 PC-208ENST00000529047 1607 ntTSL 3 BASIC17.56■□□□□ 0.4
CXCL12P48061 AL121761.2-201ENST00000598007 1648 ntBASIC17.56■□□□□ 0.4
CXCL12P48061 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC17.56■□□□□ 0.4
CXCL12P48061 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CXCL12P48061 AC120498.9-201ENST00000339021 3867 ntBASIC17.56■□□□□ 0.4
CXCL12P48061 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CXCL12P48061 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CXCL12P48061 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
CXCL12P48061 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC17.56■□□□□ 0.4
CXCL12P48061 PI4KAP1-204ENST00000612579 1703 ntBASIC17.55■□□□□ 0.4
CXCL12P48061 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC17.55■□□□□ 0.4
CXCL12P48061 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CXCL12P48061 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CXCL12P48061 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
CXCL12P48061 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC17.55■□□□□ 0.4
CXCL12P48061 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CXCL12P48061 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
CXCL12P48061 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CXCL12P48061 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CXCL12P48061 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CXCL12P48061 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CXCL12P48061 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CXCL12P48061 LINC00982-205ENST00000420957 435 ntBASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 71.3 ms