Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC14.54□□□□□ -0.08
CDX1P47902 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
CDX1P47902 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CDX1P47902 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CDX1P47902 UBALD1-205ENST00000590891 2641 ntBASIC14.54□□□□□ -0.08
CDX1P47902 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CDX1P47902 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
CDX1P47902 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
CDX1P47902 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CDX1P47902 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CDX1P47902 COPE-203ENST00000351079 907 ntTSL 2 BASIC14.54□□□□□ -0.08
CDX1P47902 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CDX1P47902 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC14.54□□□□□ -0.08
CDX1P47902 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC14.54□□□□□ -0.08
CDX1P47902 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CDX1P47902 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC14.54□□□□□ -0.08
CDX1P47902 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC14.54□□□□□ -0.08
CDX1P47902 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CDX1P47902 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
CDX1P47902 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CDX1P47902 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
CDX1P47902 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CDX1P47902 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
CDX1P47902 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC14.54□□□□□ -0.08
CDX1P47902 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
CDX1P47902 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
CDX1P47902 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CDX1P47902 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC14.54□□□□□ -0.08
CDX1P47902 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
CDX1P47902 PCDHA1-201ENST00000378133 2726 ntBASIC14.54□□□□□ -0.08
CDX1P47902 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
CDX1P47902 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC14.54□□□□□ -0.08
CDX1P47902 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
CDX1P47902 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
CDX1P47902 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
CDX1P47902 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
CDX1P47902 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
CDX1P47902 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CDX1P47902 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CDX1P47902 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CDX1P47902 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
CDX1P47902 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CDX1P47902 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CDX1P47902 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CDX1P47902 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
CDX1P47902 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
CDX1P47902 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC14.53□□□□□ -0.08
CDX1P47902 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
CDX1P47902 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CDX1P47902 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC14.53□□□□□ -0.08
CDX1P47902 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
CDX1P47902 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CDX1P47902 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC14.53□□□□□ -0.08
CDX1P47902 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CDX1P47902 GUK1-204ENST00000366721 689 ntTSL 3 BASIC14.53□□□□□ -0.08
CDX1P47902 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC14.53□□□□□ -0.08
CDX1P47902 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CDX1P47902 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CDX1P47902 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
CDX1P47902 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CDX1P47902 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC14.53□□□□□ -0.08
CDX1P47902 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CDX1P47902 GRAMD4P1-201ENST00000435181 1110 ntBASIC14.53□□□□□ -0.08
CDX1P47902 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CDX1P47902 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CDX1P47902 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC14.53□□□□□ -0.08
CDX1P47902 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CDX1P47902 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CDX1P47902 RNF146-204ENST00000476956 884 ntTSL 2 BASIC14.53□□□□□ -0.08
CDX1P47902 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC14.53□□□□□ -0.08
CDX1P47902 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC14.53□□□□□ -0.08
CDX1P47902 ETFA-216ENST00000560726 942 ntTSL 3 BASIC14.53□□□□□ -0.08
CDX1P47902 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC14.53□□□□□ -0.08
CDX1P47902 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
CDX1P47902 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC14.53□□□□□ -0.08
CDX1P47902 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC14.53□□□□□ -0.08
CDX1P47902 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CDX1P47902 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CDX1P47902 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CDX1P47902 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC14.53□□□□□ -0.08
CDX1P47902 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CDX1P47902 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CDX1P47902 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CDX1P47902 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CDX1P47902 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CDX1P47902 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
CDX1P47902 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC14.52□□□□□ -0.08
CDX1P47902 LINC00554-201ENST00000564841 3011 ntBASIC14.52□□□□□ -0.08
CDX1P47902 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.08
CDX1P47902 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC14.52□□□□□ -0.08
CDX1P47902 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC14.52□□□□□ -0.08
CDX1P47902 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.08
CDX1P47902 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CDX1P47902 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC14.52□□□□□ -0.08
CDX1P47902 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
CDX1P47902 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.08
CDX1P47902 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC14.52□□□□□ -0.08
CDX1P47902 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC14.52□□□□□ -0.08
CDX1P47902 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
CDX1P47902 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms