Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC18.45■□□□□ 0.54
PTPN9P43378 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC18.45■□□□□ 0.54
PTPN9P43378 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC18.45■□□□□ 0.54
PTPN9P43378 AC002558.1-201ENST00000488906 803 ntBASIC18.45■□□□□ 0.54
PTPN9P43378 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC18.45■□□□□ 0.54
PTPN9P43378 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC18.45■□□□□ 0.54
PTPN9P43378 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC18.45■□□□□ 0.54
PTPN9P43378 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC18.45■□□□□ 0.54
PTPN9P43378 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
PTPN9P43378 AC011467.2-201ENST00000598425 242 ntBASIC18.45■□□□□ 0.54
PTPN9P43378 AC092119.3-201ENST00000612618 583 ntBASIC18.45■□□□□ 0.54
PTPN9P43378 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
PTPN9P43378 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
PTPN9P43378 AL138688.1-201ENST00000624851 1594 ntBASIC18.45■□□□□ 0.54
PTPN9P43378 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PTPN9P43378 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
PTPN9P43378 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC18.45■□□□□ 0.54
PTPN9P43378 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
PTPN9P43378 HARS-201ENST00000307633 1780 ntTSL 2 BASIC18.45■□□□□ 0.54
PTPN9P43378 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
PTPN9P43378 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC18.45■□□□□ 0.54
PTPN9P43378 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
PTPN9P43378 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
PTPN9P43378 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
PTPN9P43378 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
PTPN9P43378 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PTPN9P43378 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC18.44■□□□□ 0.54
PTPN9P43378 NSUN5P1-202ENST00000421140 1535 ntBASIC18.44■□□□□ 0.54
PTPN9P43378 NSUN5P2-203ENST00000457352 1529 ntBASIC18.44■□□□□ 0.54
PTPN9P43378 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PTPN9P43378 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC18.44■□□□□ 0.54
PTPN9P43378 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
PTPN9P43378 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
PTPN9P43378 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
PTPN9P43378 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PTPN9P43378 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PTPN9P43378 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PTPN9P43378 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC18.44■□□□□ 0.54
PTPN9P43378 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC18.44■□□□□ 0.54
PTPN9P43378 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
PTPN9P43378 UPK3BP1-201ENST00000428678 509 ntBASIC18.44■□□□□ 0.54
PTPN9P43378 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC18.44■□□□□ 0.54
PTPN9P43378 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
PTPN9P43378 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
PTPN9P43378 AC092329.2-201ENST00000598402 547 ntBASIC18.44■□□□□ 0.54
PTPN9P43378 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC18.44■□□□□ 0.54
PTPN9P43378 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC18.44■□□□□ 0.54
PTPN9P43378 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PTPN9P43378 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
PTPN9P43378 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
PTPN9P43378 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PTPN9P43378 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC18.44■□□□□ 0.54
PTPN9P43378 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
PTPN9P43378 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
PTPN9P43378 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC18.44■□□□□ 0.54
PTPN9P43378 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
PTPN9P43378 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
PTPN9P43378 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC18.44■□□□□ 0.54
PTPN9P43378 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
PTPN9P43378 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
PTPN9P43378 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC18.44■□□□□ 0.54
PTPN9P43378 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC18.44■□□□□ 0.54
PTPN9P43378 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18.44■□□□□ 0.54
PTPN9P43378 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC18.44■□□□□ 0.54
PTPN9P43378 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC18.44■□□□□ 0.54
PTPN9P43378 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PTPN9P43378 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC18.44■□□□□ 0.54
PTPN9P43378 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC18.44■□□□□ 0.54
PTPN9P43378 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PTPN9P43378 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
PTPN9P43378 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
PTPN9P43378 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
PTPN9P43378 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
PTPN9P43378 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
PTPN9P43378 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
PTPN9P43378 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
PTPN9P43378 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
PTPN9P43378 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC18.43■□□□□ 0.54
PTPN9P43378 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC18.43■□□□□ 0.54
PTPN9P43378 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC18.43■□□□□ 0.54
PTPN9P43378 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC18.43■□□□□ 0.54
PTPN9P43378 AC012615.1-201ENST00000565797 1299 ntBASIC18.43■□□□□ 0.54
PTPN9P43378 BNIP3P18-201ENST00000593976 575 ntBASIC18.43■□□□□ 0.54
PTPN9P43378 AC019129.2-201ENST00000609837 1235 ntBASIC18.43■□□□□ 0.54
PTPN9P43378 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC18.43■□□□□ 0.54
PTPN9P43378 AC093458.2-201ENST00000623150 629 ntBASIC18.43■□□□□ 0.54
PTPN9P43378 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
PTPN9P43378 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
PTPN9P43378 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
PTPN9P43378 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
PTPN9P43378 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
PTPN9P43378 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
PTPN9P43378 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
PTPN9P43378 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
PTPN9P43378 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
PTPN9P43378 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC18.42■□□□□ 0.54
PTPN9P43378 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
PTPN9P43378 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
PTPN9P43378 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC18.42■□□□□ 0.54
PTPN9P43378 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms