Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC17.34■□□□□ 0.37
PCNAP12004 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC17.34■□□□□ 0.37
PCNAP12004 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC17.34■□□□□ 0.37
PCNAP12004 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PCNAP12004 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC17.34■□□□□ 0.37
PCNAP12004 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
PCNAP12004 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC17.34■□□□□ 0.37
PCNAP12004 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC17.34■□□□□ 0.37
PCNAP12004 ZNF444P1-201ENST00000559497 298 ntBASIC17.34■□□□□ 0.37
PCNAP12004 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC17.34■□□□□ 0.37
PCNAP12004 FGF14-AS2-201ENST00000606448 1074 ntBASIC17.34■□□□□ 0.37
PCNAP12004 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC17.34■□□□□ 0.37
PCNAP12004 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
PCNAP12004 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
PCNAP12004 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC17.34■□□□□ 0.37
PCNAP12004 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
PCNAP12004 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
PCNAP12004 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PCNAP12004 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
PCNAP12004 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
PCNAP12004 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
PCNAP12004 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
PCNAP12004 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
PCNAP12004 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
PCNAP12004 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
PCNAP12004 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
PCNAP12004 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
PCNAP12004 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC17.33■□□□□ 0.37
PCNAP12004 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
PCNAP12004 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.37
PCNAP12004 KRT18P55-202ENST00000578578 1546 ntBASIC17.33■□□□□ 0.37
PCNAP12004 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
PCNAP12004 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC17.33■□□□□ 0.36
PCNAP12004 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC17.33■□□□□ 0.36
PCNAP12004 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
PCNAP12004 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
PCNAP12004 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PCNAP12004 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC17.33■□□□□ 0.36
PCNAP12004 AC022898.2-201ENST00000616822 1312 ntBASIC17.33■□□□□ 0.36
PCNAP12004 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PCNAP12004 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC17.33■□□□□ 0.36
PCNAP12004 HES2-202ENST00000377836 507 ntTSL 2 BASIC17.33■□□□□ 0.36
PCNAP12004 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
PCNAP12004 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC17.33■□□□□ 0.36
PCNAP12004 HLA-F-220ENST00000434407 884 ntBASIC17.33■□□□□ 0.36
PCNAP12004 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC17.33■□□□□ 0.36
PCNAP12004 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC17.33■□□□□ 0.36
PCNAP12004 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC17.33■□□□□ 0.36
PCNAP12004 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC17.33■□□□□ 0.36
PCNAP12004 TEN1-204ENST00000588202 862 ntTSL 3 BASIC17.33■□□□□ 0.36
PCNAP12004 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
PCNAP12004 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC17.33■□□□□ 0.36
PCNAP12004 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PCNAP12004 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
PCNAP12004 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PCNAP12004 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC17.33■□□□□ 0.36
PCNAP12004 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
PCNAP12004 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
PCNAP12004 OR6D1P-203ENST00000641209 4860 ntBASIC17.33■□□□□ 0.36
PCNAP12004 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
PCNAP12004 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
PCNAP12004 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC17.33■□□□□ 0.36
PCNAP12004 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PCNAP12004 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PCNAP12004 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCNAP12004 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC17.32■□□□□ 0.36
PCNAP12004 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PCNAP12004 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCNAP12004 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
PCNAP12004 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCNAP12004 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCNAP12004 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCNAP12004 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCNAP12004 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PCNAP12004 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
PCNAP12004 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
PCNAP12004 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCNAP12004 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PCNAP12004 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCNAP12004 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
PCNAP12004 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCNAP12004 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCNAP12004 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC17.32■□□□□ 0.36
PCNAP12004 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC17.32■□□□□ 0.36
PCNAP12004 TMPOP1-202ENST00000424642 1267 ntBASIC17.32■□□□□ 0.36
PCNAP12004 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC17.32■□□□□ 0.36
PCNAP12004 AC113404.2-201ENST00000507884 177 ntBASIC17.32■□□□□ 0.36
PCNAP12004 DUTP2-201ENST00000519164 463 ntBASIC17.32■□□□□ 0.36
PCNAP12004 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC17.32■□□□□ 0.36
PCNAP12004 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
PCNAP12004 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PCNAP12004 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
PCNAP12004 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCNAP12004 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PCNAP12004 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCNAP12004 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PCNAP12004 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PCNAP12004 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCNAP12004 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCNAP12004 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms