Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HMGB1P09429 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC20.94■□□□□ 0.94
HMGB1P09429 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC20.94■□□□□ 0.94
HMGB1P09429 ADM-208ENST00000534464 1640 ntTSL 2 BASIC20.94■□□□□ 0.94
HMGB1P09429 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
HMGB1P09429 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC20.94■□□□□ 0.94
HMGB1P09429 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HMGB1P09429 FST-202ENST00000396947 2538 ntTSL 5 BASIC20.94■□□□□ 0.94
HMGB1P09429 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
HMGB1P09429 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HMGB1P09429 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HMGB1P09429 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
HMGB1P09429 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
HMGB1P09429 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC20.94■□□□□ 0.94
HMGB1P09429 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC20.94■□□□□ 0.94
HMGB1P09429 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC20.94■□□□□ 0.94
HMGB1P09429 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC20.94■□□□□ 0.94
HMGB1P09429 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC20.94■□□□□ 0.94
HMGB1P09429 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC20.94■□□□□ 0.94
HMGB1P09429 AL138831.2-201ENST00000606564 490 ntBASIC20.94■□□□□ 0.94
HMGB1P09429 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC20.94■□□□□ 0.94
HMGB1P09429 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC20.94■□□□□ 0.94
HMGB1P09429 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC20.94■□□□□ 0.94
HMGB1P09429 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
HMGB1P09429 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC20.94■□□□□ 0.94
HMGB1P09429 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HMGB1P09429 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
HMGB1P09429 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HMGB1P09429 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
HMGB1P09429 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC20.94■□□□□ 0.94
HMGB1P09429 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HMGB1P09429 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HMGB1P09429 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
HMGB1P09429 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
HMGB1P09429 AC010460.3-201ENST00000511359 1579 ntBASIC20.93■□□□□ 0.94
HMGB1P09429 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC20.93■□□□□ 0.94
HMGB1P09429 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
HMGB1P09429 HR-201ENST00000312841 5351 ntTSL 5 BASIC20.93■□□□□ 0.94
HMGB1P09429 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC20.93■□□□□ 0.94
HMGB1P09429 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
HMGB1P09429 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
HMGB1P09429 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
HMGB1P09429 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
HMGB1P09429 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
HMGB1P09429 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
HMGB1P09429 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
HMGB1P09429 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
HMGB1P09429 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC20.93■□□□□ 0.94
HMGB1P09429 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
HMGB1P09429 PON3-205ENST00000451904 1053 ntTSL 3 BASIC20.93■□□□□ 0.94
HMGB1P09429 VENTXP7-201ENST00000475503 772 ntBASIC20.93■□□□□ 0.94
HMGB1P09429 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC20.93■□□□□ 0.94
HMGB1P09429 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
HMGB1P09429 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC20.93■□□□□ 0.94
HMGB1P09429 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
HMGB1P09429 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
HMGB1P09429 IER3-202ENST00000376377 1350 ntBASIC20.93■□□□□ 0.94
HMGB1P09429 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
HMGB1P09429 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
HMGB1P09429 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
HMGB1P09429 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
HMGB1P09429 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
HMGB1P09429 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC20.92■□□□□ 0.94
HMGB1P09429 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
HMGB1P09429 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC20.92■□□□□ 0.94
HMGB1P09429 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
HMGB1P09429 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
HMGB1P09429 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
HMGB1P09429 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC20.92■□□□□ 0.94
HMGB1P09429 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
HMGB1P09429 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
HMGB1P09429 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
HMGB1P09429 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC20.92■□□□□ 0.94
HMGB1P09429 AC007967.3-201ENST00000434308 558 ntBASIC20.92■□□□□ 0.94
HMGB1P09429 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
HMGB1P09429 TSSC2-201ENST00000450217 709 ntBASIC20.92■□□□□ 0.94
HMGB1P09429 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC20.92■□□□□ 0.94
HMGB1P09429 AC002558.1-201ENST00000488906 803 ntBASIC20.92■□□□□ 0.94
HMGB1P09429 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC20.92■□□□□ 0.94
HMGB1P09429 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
HMGB1P09429 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC20.92■□□□□ 0.94
HMGB1P09429 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC20.92■□□□□ 0.94
HMGB1P09429 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
HMGB1P09429 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
HMGB1P09429 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
HMGB1P09429 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
HMGB1P09429 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC20.92■□□□□ 0.94
HMGB1P09429 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC20.92■□□□□ 0.94
HMGB1P09429 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
HMGB1P09429 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
HMGB1P09429 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
HMGB1P09429 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
HMGB1P09429 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
HMGB1P09429 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
HMGB1P09429 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
HMGB1P09429 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
HMGB1P09429 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
HMGB1P09429 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
HMGB1P09429 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
HMGB1P09429 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms