Protein–RNA interactions for Protein: O75400

PRPF40A, Pre-mRNA-processing factor 40 homolog A, humanhuman

Known RBP Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40AO75400 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PRPF40AO75400 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
PRPF40AO75400 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PRPF40AO75400 PCDH8P1-201ENST00000428983 2773 ntBASIC20.68■□□□□ 0.9
PRPF40AO75400 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
PRPF40AO75400 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PRPF40AO75400 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
PRPF40AO75400 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PRPF40AO75400 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PRPF40AO75400 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
PRPF40AO75400 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
PRPF40AO75400 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
PRPF40AO75400 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PRPF40AO75400 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
PRPF40AO75400 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC20.68■□□□□ 0.9
PRPF40AO75400 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
PRPF40AO75400 PCDHA14-201ENST00000506751 2298 ntBASIC20.68■□□□□ 0.9
PRPF40AO75400 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PRPF40AO75400 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC20.68■□□□□ 0.9
PRPF40AO75400 RBM17P1-201ENST00000453646 1190 ntBASIC20.68■□□□□ 0.9
PRPF40AO75400 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC20.68■□□□□ 0.9
PRPF40AO75400 AC097488.1-201ENST00000507834 756 ntBASIC20.68■□□□□ 0.9
PRPF40AO75400 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC20.68■□□□□ 0.9
PRPF40AO75400 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC20.68■□□□□ 0.9
PRPF40AO75400 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PRPF40AO75400 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC20.68■□□□□ 0.9
PRPF40AO75400 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
PRPF40AO75400 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC20.68■□□□□ 0.9
PRPF40AO75400 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
PRPF40AO75400 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PRPF40AO75400 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PRPF40AO75400 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
PRPF40AO75400 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
PRPF40AO75400 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC20.68■□□□□ 0.9
PRPF40AO75400 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC20.68■□□□□ 0.9
PRPF40AO75400 CA12-203ENST00000422263 2556 ntTSL 2 BASIC20.68■□□□□ 0.9
PRPF40AO75400 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
PRPF40AO75400 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PRPF40AO75400 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PRPF40AO75400 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
PRPF40AO75400 AC105020.1-201ENST00000435356 2205 ntBASIC20.68■□□□□ 0.9
PRPF40AO75400 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PRPF40AO75400 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
PRPF40AO75400 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC20.67■□□□□ 0.9
PRPF40AO75400 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
PRPF40AO75400 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC20.67■□□□□ 0.9
PRPF40AO75400 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PRPF40AO75400 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
PRPF40AO75400 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
PRPF40AO75400 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PRPF40AO75400 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PRPF40AO75400 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC20.67■□□□□ 0.9
PRPF40AO75400 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PRPF40AO75400 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC20.67■□□□□ 0.9
PRPF40AO75400 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC20.67■□□□□ 0.9
PRPF40AO75400 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC20.67■□□□□ 0.9
PRPF40AO75400 AL139384.1-201ENST00000612143 3047 ntBASIC20.67■□□□□ 0.9
PRPF40AO75400 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC20.67■□□□□ 0.9
PRPF40AO75400 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC20.67■□□□□ 0.9
PRPF40AO75400 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
PRPF40AO75400 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
PRPF40AO75400 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC20.67■□□□□ 0.9
PRPF40AO75400 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PRPF40AO75400 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PRPF40AO75400 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
PRPF40AO75400 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
PRPF40AO75400 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
PRPF40AO75400 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
PRPF40AO75400 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
PRPF40AO75400 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PRPF40AO75400 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
PRPF40AO75400 AC087499.1-201ENST00000418141 1075 ntBASIC20.66■□□□□ 0.9
PRPF40AO75400 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
PRPF40AO75400 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PRPF40AO75400 AP005242.2-201ENST00000580065 1175 ntBASIC20.66■□□□□ 0.9
PRPF40AO75400 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC20.66■□□□□ 0.9
PRPF40AO75400 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
PRPF40AO75400 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
PRPF40AO75400 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
PRPF40AO75400 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
PRPF40AO75400 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
PRPF40AO75400 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC20.66■□□□□ 0.9
PRPF40AO75400 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PRPF40AO75400 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
PRPF40AO75400 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC20.66■□□□□ 0.9
PRPF40AO75400 REXO1L11P-201ENST00000620964 1927 ntBASIC20.66■□□□□ 0.9
PRPF40AO75400 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PRPF40AO75400 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC20.66■□□□□ 0.9
PRPF40AO75400 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
PRPF40AO75400 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PRPF40AO75400 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
PRPF40AO75400 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PRPF40AO75400 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC20.65■□□□□ 0.9
PRPF40AO75400 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PRPF40AO75400 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
PRPF40AO75400 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
PRPF40AO75400 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC20.65■□□□□ 0.9
PRPF40AO75400 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PRPF40AO75400 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC20.65■□□□□ 0.9
PRPF40AO75400 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms