Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC17.45■□□□□ 0.38
VPS4BO75351 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
VPS4BO75351 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS4BO75351 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS4BO75351 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC17.45■□□□□ 0.38
VPS4BO75351 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
VPS4BO75351 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
VPS4BO75351 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS4BO75351 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
VPS4BO75351 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC17.45■□□□□ 0.38
VPS4BO75351 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS4BO75351 AC133963.1-201ENST00000504166 1679 ntBASIC17.45■□□□□ 0.38
VPS4BO75351 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
VPS4BO75351 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
VPS4BO75351 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
VPS4BO75351 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC17.44■□□□□ 0.38
VPS4BO75351 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC17.44■□□□□ 0.38
VPS4BO75351 AC141586.5-201ENST00000624546 2050 ntBASIC17.44■□□□□ 0.38
VPS4BO75351 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
VPS4BO75351 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
VPS4BO75351 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC17.44■□□□□ 0.38
VPS4BO75351 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
VPS4BO75351 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
VPS4BO75351 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
VPS4BO75351 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC17.44■□□□□ 0.38
VPS4BO75351 ATP5G2P1-201ENST00000433580 426 ntBASIC17.44■□□□□ 0.38
VPS4BO75351 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC17.44■□□□□ 0.38
VPS4BO75351 SNX5-210ENST00000481323 562 ntTSL 3 BASIC17.44■□□□□ 0.38
VPS4BO75351 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC17.44■□□□□ 0.38
VPS4BO75351 PRR29-207ENST00000580752 458 ntTSL 3 BASIC17.44■□□□□ 0.38
VPS4BO75351 BCL10-202ENST00000620248 774 ntTSL 5 BASIC17.44■□□□□ 0.38
VPS4BO75351 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
VPS4BO75351 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
VPS4BO75351 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
VPS4BO75351 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
VPS4BO75351 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VPS4BO75351 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VPS4BO75351 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
VPS4BO75351 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
VPS4BO75351 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VPS4BO75351 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
VPS4BO75351 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
VPS4BO75351 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC17.44■□□□□ 0.38
VPS4BO75351 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
VPS4BO75351 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
VPS4BO75351 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
VPS4BO75351 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
VPS4BO75351 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VPS4BO75351 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VPS4BO75351 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC17.43■□□□□ 0.38
VPS4BO75351 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VPS4BO75351 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VPS4BO75351 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
VPS4BO75351 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
VPS4BO75351 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC17.43■□□□□ 0.38
VPS4BO75351 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC17.43■□□□□ 0.38
VPS4BO75351 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC17.43■□□□□ 0.38
VPS4BO75351 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
VPS4BO75351 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VPS4BO75351 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
VPS4BO75351 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
VPS4BO75351 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC17.43■□□□□ 0.38
VPS4BO75351 KRT18P38-201ENST00000449496 1282 ntBASIC17.43■□□□□ 0.38
VPS4BO75351 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
VPS4BO75351 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC17.43■□□□□ 0.38
VPS4BO75351 MIR3652-201ENST00000579335 131 ntBASIC17.43■□□□□ 0.38
VPS4BO75351 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC17.43■□□□□ 0.38
VPS4BO75351 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
VPS4BO75351 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VPS4BO75351 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VPS4BO75351 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VPS4BO75351 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
VPS4BO75351 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VPS4BO75351 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
VPS4BO75351 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
VPS4BO75351 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VPS4BO75351 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
VPS4BO75351 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VPS4BO75351 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS4BO75351 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
VPS4BO75351 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC17.42■□□□□ 0.38
VPS4BO75351 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC17.42■□□□□ 0.38
VPS4BO75351 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS4BO75351 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
VPS4BO75351 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC17.42■□□□□ 0.38
VPS4BO75351 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC17.42■□□□□ 0.38
VPS4BO75351 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC17.42■□□□□ 0.38
VPS4BO75351 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
VPS4BO75351 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS4BO75351 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS4BO75351 AC004870.1-201ENST00000315132 882 ntBASIC17.42■□□□□ 0.38
VPS4BO75351 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS4BO75351 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC17.42■□□□□ 0.38
VPS4BO75351 AC246785.2-201ENST00000432512 513 ntBASIC17.42■□□□□ 0.38
VPS4BO75351 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VPS4BO75351 SDHD-206ENST00000528182 754 ntTSL 3 BASIC17.42■□□□□ 0.38
VPS4BO75351 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC17.42■□□□□ 0.38
VPS4BO75351 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC17.42■□□□□ 0.38
VPS4BO75351 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC17.42■□□□□ 0.38
VPS4BO75351 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC17.42■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms