Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
ATG4BQ9Y4P1 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
ATG4BQ9Y4P1 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC16.84■□□□□ 0.29
ATG4BQ9Y4P1 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
ATG4BQ9Y4P1 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
ATG4BQ9Y4P1 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC16.84■□□□□ 0.29
ATG4BQ9Y4P1 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
ATG4BQ9Y4P1 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
ATG4BQ9Y4P1 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
ATG4BQ9Y4P1 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC16.84■□□□□ 0.29
ATG4BQ9Y4P1 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
ATG4BQ9Y4P1 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.29
ATG4BQ9Y4P1 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC16.83■□□□□ 0.28
ATG4BQ9Y4P1 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC16.83■□□□□ 0.28
ATG4BQ9Y4P1 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
ATG4BQ9Y4P1 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
ATG4BQ9Y4P1 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
ATG4BQ9Y4P1 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
ATG4BQ9Y4P1 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
ATG4BQ9Y4P1 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
ATG4BQ9Y4P1 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
ATG4BQ9Y4P1 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
ATG4BQ9Y4P1 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
ATG4BQ9Y4P1 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
ATG4BQ9Y4P1 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
ATG4BQ9Y4P1 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC16.83■□□□□ 0.28
ATG4BQ9Y4P1 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
ATG4BQ9Y4P1 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC16.83■□□□□ 0.28
ATG4BQ9Y4P1 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC16.83■□□□□ 0.28
ATG4BQ9Y4P1 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC16.83■□□□□ 0.28
ATG4BQ9Y4P1 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC16.83■□□□□ 0.28
ATG4BQ9Y4P1 DDX43P3-201ENST00000441064 443 ntBASIC16.83■□□□□ 0.28
ATG4BQ9Y4P1 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
ATG4BQ9Y4P1 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
ATG4BQ9Y4P1 KRT18P1-202ENST00000452408 1331 ntBASIC16.83■□□□□ 0.28
ATG4BQ9Y4P1 AC091607.1-201ENST00000490318 1060 ntBASIC16.83■□□□□ 0.28
ATG4BQ9Y4P1 NMU-205ENST00000511469 756 ntTSL 3 BASIC16.83■□□□□ 0.28
ATG4BQ9Y4P1 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC16.83■□□□□ 0.28
ATG4BQ9Y4P1 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC16.83■□□□□ 0.28
ATG4BQ9Y4P1 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
ATG4BQ9Y4P1 AC093458.2-201ENST00000623150 629 ntBASIC16.83■□□□□ 0.28
ATG4BQ9Y4P1 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
ATG4BQ9Y4P1 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
ATG4BQ9Y4P1 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
ATG4BQ9Y4P1 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
ATG4BQ9Y4P1 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
ATG4BQ9Y4P1 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
ATG4BQ9Y4P1 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
ATG4BQ9Y4P1 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC16.83■□□□□ 0.28
ATG4BQ9Y4P1 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
ATG4BQ9Y4P1 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC16.82■□□□□ 0.28
ATG4BQ9Y4P1 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
ATG4BQ9Y4P1 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC16.82■□□□□ 0.28
ATG4BQ9Y4P1 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ATG4BQ9Y4P1 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC16.82■□□□□ 0.28
ATG4BQ9Y4P1 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
ATG4BQ9Y4P1 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
ATG4BQ9Y4P1 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ATG4BQ9Y4P1 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ATG4BQ9Y4P1 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ATG4BQ9Y4P1 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ATG4BQ9Y4P1 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
ATG4BQ9Y4P1 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
ATG4BQ9Y4P1 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
ATG4BQ9Y4P1 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC16.82■□□□□ 0.28
ATG4BQ9Y4P1 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
ATG4BQ9Y4P1 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ATG4BQ9Y4P1 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC16.82■□□□□ 0.28
ATG4BQ9Y4P1 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC16.82■□□□□ 0.28
ATG4BQ9Y4P1 AP002414.4-201ENST00000589764 1148 ntBASIC16.82■□□□□ 0.28
ATG4BQ9Y4P1 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
ATG4BQ9Y4P1 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC16.82■□□□□ 0.28
ATG4BQ9Y4P1 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
ATG4BQ9Y4P1 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
ATG4BQ9Y4P1 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
ATG4BQ9Y4P1 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
ATG4BQ9Y4P1 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC16.81■□□□□ 0.28
ATG4BQ9Y4P1 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
ATG4BQ9Y4P1 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
ATG4BQ9Y4P1 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC16.81■□□□□ 0.28
ATG4BQ9Y4P1 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ATG4BQ9Y4P1 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC16.81■□□□□ 0.28
ATG4BQ9Y4P1 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ATG4BQ9Y4P1 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
ATG4BQ9Y4P1 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
ATG4BQ9Y4P1 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ATG4BQ9Y4P1 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
ATG4BQ9Y4P1 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ATG4BQ9Y4P1 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
ATG4BQ9Y4P1 FZD10-202ENST00000539839 3282 ntBASIC16.81■□□□□ 0.28
ATG4BQ9Y4P1 REXO1L11P-201ENST00000620964 1927 ntBASIC16.81■□□□□ 0.28
ATG4BQ9Y4P1 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ATG4BQ9Y4P1 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ATG4BQ9Y4P1 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ATG4BQ9Y4P1 AC096633.1-201ENST00000422446 749 ntBASIC16.81■□□□□ 0.28
ATG4BQ9Y4P1 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC16.81■□□□□ 0.28
ATG4BQ9Y4P1 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC16.81■□□□□ 0.28
ATG4BQ9Y4P1 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
ATG4BQ9Y4P1 METTL23-204ENST00000586752 904 ntTSL 2 BASIC16.81■□□□□ 0.28
ATG4BQ9Y4P1 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms