Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SMARCAL1Q9NZC9 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC18.74■□□□□ 0.59
SMARCAL1Q9NZC9 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC18.74■□□□□ 0.59
SMARCAL1Q9NZC9 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SMARCAL1Q9NZC9 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
SMARCAL1Q9NZC9 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC18.74■□□□□ 0.59
SMARCAL1Q9NZC9 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC18.74■□□□□ 0.59
SMARCAL1Q9NZC9 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC18.74■□□□□ 0.59
SMARCAL1Q9NZC9 ETFA-216ENST00000560726 942 ntTSL 3 BASIC18.74■□□□□ 0.59
SMARCAL1Q9NZC9 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC18.74■□□□□ 0.59
SMARCAL1Q9NZC9 AP005242.2-201ENST00000580065 1175 ntBASIC18.74■□□□□ 0.59
SMARCAL1Q9NZC9 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SMARCAL1Q9NZC9 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
SMARCAL1Q9NZC9 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SMARCAL1Q9NZC9 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC18.74■□□□□ 0.59
SMARCAL1Q9NZC9 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SMARCAL1Q9NZC9 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
SMARCAL1Q9NZC9 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SMARCAL1Q9NZC9 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC18.73■□□□□ 0.59
SMARCAL1Q9NZC9 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
SMARCAL1Q9NZC9 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
SMARCAL1Q9NZC9 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SMARCAL1Q9NZC9 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SMARCAL1Q9NZC9 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
SMARCAL1Q9NZC9 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
SMARCAL1Q9NZC9 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SMARCAL1Q9NZC9 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
SMARCAL1Q9NZC9 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
SMARCAL1Q9NZC9 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SMARCAL1Q9NZC9 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SMARCAL1Q9NZC9 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SMARCAL1Q9NZC9 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SMARCAL1Q9NZC9 MIR1238-201ENST00000408483 83 ntBASIC18.73■□□□□ 0.59
SMARCAL1Q9NZC9 AL390955.1-201ENST00000428694 934 ntBASIC18.73■□□□□ 0.59
SMARCAL1Q9NZC9 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SMARCAL1Q9NZC9 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC18.73■□□□□ 0.59
SMARCAL1Q9NZC9 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
SMARCAL1Q9NZC9 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SMARCAL1Q9NZC9 PCDHA14-201ENST00000506751 2298 ntBASIC18.73■□□□□ 0.59
SMARCAL1Q9NZC9 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
SMARCAL1Q9NZC9 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC18.73■□□□□ 0.59
SMARCAL1Q9NZC9 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
SMARCAL1Q9NZC9 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SMARCAL1Q9NZC9 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC18.73■□□□□ 0.59
SMARCAL1Q9NZC9 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SMARCAL1Q9NZC9 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
SMARCAL1Q9NZC9 AC092338.2-201ENST00000568827 1415 ntBASIC18.73■□□□□ 0.59
SMARCAL1Q9NZC9 AC105020.1-201ENST00000435356 2205 ntBASIC18.73■□□□□ 0.59
SMARCAL1Q9NZC9 AC079328.2-201ENST00000561241 3354 ntBASIC18.73■□□□□ 0.59
SMARCAL1Q9NZC9 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SMARCAL1Q9NZC9 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC18.73■□□□□ 0.59
SMARCAL1Q9NZC9 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SMARCAL1Q9NZC9 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
SMARCAL1Q9NZC9 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC18.72■□□□□ 0.59
SMARCAL1Q9NZC9 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SMARCAL1Q9NZC9 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC18.72■□□□□ 0.59
SMARCAL1Q9NZC9 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SMARCAL1Q9NZC9 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SMARCAL1Q9NZC9 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC18.72■□□□□ 0.59
SMARCAL1Q9NZC9 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SMARCAL1Q9NZC9 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
SMARCAL1Q9NZC9 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC18.72■□□□□ 0.59
SMARCAL1Q9NZC9 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC18.72■□□□□ 0.59
SMARCAL1Q9NZC9 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC18.72■□□□□ 0.59
SMARCAL1Q9NZC9 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SMARCAL1Q9NZC9 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SMARCAL1Q9NZC9 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SMARCAL1Q9NZC9 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
SMARCAL1Q9NZC9 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
SMARCAL1Q9NZC9 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SMARCAL1Q9NZC9 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SMARCAL1Q9NZC9 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
SMARCAL1Q9NZC9 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC18.72■□□□□ 0.59
SMARCAL1Q9NZC9 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC18.72■□□□□ 0.59
SMARCAL1Q9NZC9 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC18.72■□□□□ 0.59
SMARCAL1Q9NZC9 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC18.72■□□□□ 0.59
SMARCAL1Q9NZC9 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC18.72■□□□□ 0.59
SMARCAL1Q9NZC9 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC18.72■□□□□ 0.59
SMARCAL1Q9NZC9 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SMARCAL1Q9NZC9 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC18.72■□□□□ 0.59
SMARCAL1Q9NZC9 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SMARCAL1Q9NZC9 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC18.72■□□□□ 0.59
SMARCAL1Q9NZC9 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SMARCAL1Q9NZC9 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC18.72■□□□□ 0.59
SMARCAL1Q9NZC9 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
SMARCAL1Q9NZC9 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SMARCAL1Q9NZC9 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC18.72■□□□□ 0.59
SMARCAL1Q9NZC9 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
SMARCAL1Q9NZC9 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
SMARCAL1Q9NZC9 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC18.71■□□□□ 0.59
SMARCAL1Q9NZC9 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC18.71■□□□□ 0.59
SMARCAL1Q9NZC9 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SMARCAL1Q9NZC9 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
SMARCAL1Q9NZC9 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SMARCAL1Q9NZC9 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SMARCAL1Q9NZC9 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
SMARCAL1Q9NZC9 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC18.71■□□□□ 0.59
SMARCAL1Q9NZC9 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SMARCAL1Q9NZC9 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
SMARCAL1Q9NZC9 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms