Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC17.33■□□□□ 0.37
CCDC28BQ9BUN5 LINC00167-201ENST00000530583 1419 ntBASIC17.33■□□□□ 0.36
CCDC28BQ9BUN5 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC17.33■□□□□ 0.36
CCDC28BQ9BUN5 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC28BQ9BUN5 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
CCDC28BQ9BUN5 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC17.33■□□□□ 0.36
CCDC28BQ9BUN5 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC17.33■□□□□ 0.36
CCDC28BQ9BUN5 TSPY17P-201ENST00000450329 467 ntBASIC17.33■□□□□ 0.36
CCDC28BQ9BUN5 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC17.33■□□□□ 0.36
CCDC28BQ9BUN5 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC17.33■□□□□ 0.36
CCDC28BQ9BUN5 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC17.33■□□□□ 0.36
CCDC28BQ9BUN5 GRAP-204ENST00000573099 846 ntTSL 3 BASIC17.33■□□□□ 0.36
CCDC28BQ9BUN5 AP005242.2-201ENST00000580065 1175 ntBASIC17.33■□□□□ 0.36
CCDC28BQ9BUN5 MMD2-204ENST00000612910 778 ntTSL 5 BASIC17.33■□□□□ 0.36
CCDC28BQ9BUN5 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC28BQ9BUN5 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
CCDC28BQ9BUN5 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
CCDC28BQ9BUN5 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC28BQ9BUN5 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC28BQ9BUN5 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC28BQ9BUN5 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC28BQ9BUN5 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
CCDC28BQ9BUN5 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC17.33■□□□□ 0.36
CCDC28BQ9BUN5 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC17.33■□□□□ 0.36
CCDC28BQ9BUN5 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
CCDC28BQ9BUN5 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC28BQ9BUN5 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC28BQ9BUN5 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC28BQ9BUN5 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC17.32■□□□□ 0.36
CCDC28BQ9BUN5 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC28BQ9BUN5 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC28BQ9BUN5 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC17.32■□□□□ 0.36
CCDC28BQ9BUN5 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC28BQ9BUN5 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC17.32■□□□□ 0.36
CCDC28BQ9BUN5 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC28BQ9BUN5 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC28BQ9BUN5 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC28BQ9BUN5 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
CCDC28BQ9BUN5 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC28BQ9BUN5 REXO1L11P-201ENST00000620964 1927 ntBASIC17.32■□□□□ 0.36
CCDC28BQ9BUN5 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC28BQ9BUN5 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
CCDC28BQ9BUN5 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC28BQ9BUN5 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC28BQ9BUN5 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC28BQ9BUN5 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
CCDC28BQ9BUN5 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC28BQ9BUN5 SLC25A1P2-201ENST00000430693 912 ntBASIC17.32■□□□□ 0.36
CCDC28BQ9BUN5 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC28BQ9BUN5 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC28BQ9BUN5 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC17.32■□□□□ 0.36
CCDC28BQ9BUN5 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC28BQ9BUN5 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC28BQ9BUN5 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC17.32■□□□□ 0.36
CCDC28BQ9BUN5 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC28BQ9BUN5 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC28BQ9BUN5 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC28BQ9BUN5 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC17.32■□□□□ 0.36
CCDC28BQ9BUN5 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC28BQ9BUN5 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC28BQ9BUN5 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC28BQ9BUN5 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC28BQ9BUN5 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC28BQ9BUN5 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC28BQ9BUN5 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CCDC28BQ9BUN5 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC28BQ9BUN5 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC17.31■□□□□ 0.36
CCDC28BQ9BUN5 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC28BQ9BUN5 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
CCDC28BQ9BUN5 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC28BQ9BUN5 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC28BQ9BUN5 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
CCDC28BQ9BUN5 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC17.31■□□□□ 0.36
CCDC28BQ9BUN5 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC28BQ9BUN5 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC28BQ9BUN5 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC28BQ9BUN5 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC28BQ9BUN5 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC28BQ9BUN5 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC28BQ9BUN5 GRAMD4P1-201ENST00000435181 1110 ntBASIC17.31■□□□□ 0.36
CCDC28BQ9BUN5 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC17.31■□□□□ 0.36
CCDC28BQ9BUN5 REEP1-209ENST00000541910 969 ntTSL 2 BASIC17.31■□□□□ 0.36
CCDC28BQ9BUN5 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC17.31■□□□□ 0.36
CCDC28BQ9BUN5 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC17.31■□□□□ 0.36
CCDC28BQ9BUN5 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC17.31■□□□□ 0.36
CCDC28BQ9BUN5 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC28BQ9BUN5 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
CCDC28BQ9BUN5 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC28BQ9BUN5 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC28BQ9BUN5 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CCDC28BQ9BUN5 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC17.31■□□□□ 0.36
CCDC28BQ9BUN5 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC17.3■□□□□ 0.36
CCDC28BQ9BUN5 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC28BQ9BUN5 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC17.3■□□□□ 0.36
CCDC28BQ9BUN5 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
CCDC28BQ9BUN5 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC28BQ9BUN5 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC28BQ9BUN5 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC17.3■□□□□ 0.36
CCDC28BQ9BUN5 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
CCDC28BQ9BUN5 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms