Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
NKX2-3Q8TAU0 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC21.02■□□□□ 0.96
NKX2-3Q8TAU0 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
NKX2-3Q8TAU0 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
NKX2-3Q8TAU0 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
NKX2-3Q8TAU0 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
NKX2-3Q8TAU0 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC21.02■□□□□ 0.96
NKX2-3Q8TAU0 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC21.02■□□□□ 0.96
NKX2-3Q8TAU0 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.95
NKX2-3Q8TAU0 REXO1L11P-201ENST00000620964 1927 ntBASIC21.02■□□□□ 0.95
NKX2-3Q8TAU0 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC21.01■□□□□ 0.95
NKX2-3Q8TAU0 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC21.01■□□□□ 0.95
NKX2-3Q8TAU0 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC21.01■□□□□ 0.95
NKX2-3Q8TAU0 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
NKX2-3Q8TAU0 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
NKX2-3Q8TAU0 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
NKX2-3Q8TAU0 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
NKX2-3Q8TAU0 CCS-201ENST00000310190 942 ntTSL 5 BASIC21.01■□□□□ 0.95
NKX2-3Q8TAU0 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC21.01■□□□□ 0.95
NKX2-3Q8TAU0 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC21.01■□□□□ 0.95
NKX2-3Q8TAU0 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
NKX2-3Q8TAU0 AC096633.1-201ENST00000422446 749 ntBASIC21.01■□□□□ 0.95
NKX2-3Q8TAU0 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC21.01■□□□□ 0.95
NKX2-3Q8TAU0 AC139887.3-201ENST00000568585 713 ntBASIC21.01■□□□□ 0.95
NKX2-3Q8TAU0 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
NKX2-3Q8TAU0 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
NKX2-3Q8TAU0 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
NKX2-3Q8TAU0 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
NKX2-3Q8TAU0 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
NKX2-3Q8TAU0 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC21.01■□□□□ 0.95
NKX2-3Q8TAU0 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
NKX2-3Q8TAU0 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC21.01■□□□□ 0.95
NKX2-3Q8TAU0 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
NKX2-3Q8TAU0 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
NKX2-3Q8TAU0 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC21■□□□□ 0.95
NKX2-3Q8TAU0 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
NKX2-3Q8TAU0 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
NKX2-3Q8TAU0 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
NKX2-3Q8TAU0 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC21■□□□□ 0.95
NKX2-3Q8TAU0 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
NKX2-3Q8TAU0 AC243591.1-201ENST00000452967 1364 ntBASIC21■□□□□ 0.95
NKX2-3Q8TAU0 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
NKX2-3Q8TAU0 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
NKX2-3Q8TAU0 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC21■□□□□ 0.95
NKX2-3Q8TAU0 EMD-201ENST00000369835 966 ntTSL 3 BASIC21■□□□□ 0.95
NKX2-3Q8TAU0 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC21■□□□□ 0.95
NKX2-3Q8TAU0 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC21■□□□□ 0.95
NKX2-3Q8TAU0 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
NKX2-3Q8TAU0 RPL18-209ENST00000550645 463 ntTSL 5 BASIC21■□□□□ 0.95
NKX2-3Q8TAU0 RPL18-214ENST00000552588 559 ntTSL 3 BASIC21■□□□□ 0.95
NKX2-3Q8TAU0 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC21■□□□□ 0.95
NKX2-3Q8TAU0 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
NKX2-3Q8TAU0 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC21■□□□□ 0.95
NKX2-3Q8TAU0 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC21■□□□□ 0.95
NKX2-3Q8TAU0 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC21■□□□□ 0.95
NKX2-3Q8TAU0 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
NKX2-3Q8TAU0 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC21■□□□□ 0.95
NKX2-3Q8TAU0 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC21■□□□□ 0.95
NKX2-3Q8TAU0 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC21■□□□□ 0.95
NKX2-3Q8TAU0 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC21■□□□□ 0.95
NKX2-3Q8TAU0 AC079781.4-201ENST00000641908 219 ntBASIC21■□□□□ 0.95
NKX2-3Q8TAU0 AC005332.8-201ENST00000622750 2735 ntBASIC21■□□□□ 0.95
NKX2-3Q8TAU0 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC21■□□□□ 0.95
NKX2-3Q8TAU0 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC21■□□□□ 0.95
NKX2-3Q8TAU0 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC21■□□□□ 0.95
NKX2-3Q8TAU0 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
NKX2-3Q8TAU0 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC20.99■□□□□ 0.95
NKX2-3Q8TAU0 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
NKX2-3Q8TAU0 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC20.99■□□□□ 0.95
NKX2-3Q8TAU0 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.99■□□□□ 0.95
NKX2-3Q8TAU0 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NKX2-3Q8TAU0 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC20.99■□□□□ 0.95
NKX2-3Q8TAU0 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
NKX2-3Q8TAU0 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
NKX2-3Q8TAU0 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
NKX2-3Q8TAU0 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NKX2-3Q8TAU0 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC20.99■□□□□ 0.95
NKX2-3Q8TAU0 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC20.99■□□□□ 0.95
NKX2-3Q8TAU0 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
NKX2-3Q8TAU0 MINOS1P3-201ENST00000457048 203 ntBASIC20.99■□□□□ 0.95
NKX2-3Q8TAU0 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NKX2-3Q8TAU0 AC096582.2-201ENST00000510860 516 ntBASIC20.99■□□□□ 0.95
NKX2-3Q8TAU0 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC20.99■□□□□ 0.95
NKX2-3Q8TAU0 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
NKX2-3Q8TAU0 ADM-208ENST00000534464 1640 ntTSL 2 BASIC20.99■□□□□ 0.95
NKX2-3Q8TAU0 MED29-202ENST00000594368 1471 ntTSL 2 BASIC20.99■□□□□ 0.95
NKX2-3Q8TAU0 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
NKX2-3Q8TAU0 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC20.99■□□□□ 0.95
NKX2-3Q8TAU0 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
NKX2-3Q8TAU0 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC20.98■□□□□ 0.95
NKX2-3Q8TAU0 INTS4P1-201ENST00000438455 1935 ntBASIC20.98■□□□□ 0.95
NKX2-3Q8TAU0 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
NKX2-3Q8TAU0 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
NKX2-3Q8TAU0 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
NKX2-3Q8TAU0 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC20.98■□□□□ 0.95
NKX2-3Q8TAU0 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
NKX2-3Q8TAU0 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
NKX2-3Q8TAU0 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
NKX2-3Q8TAU0 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC20.98■□□□□ 0.95
NKX2-3Q8TAU0 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms