Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.24
ZNF540Q8NDQ6 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
ZNF540Q8NDQ6 SP100-208ENST00000427101 1922 ntTSL 2 BASIC16.52■□□□□ 0.23
ZNF540Q8NDQ6 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC16.52■□□□□ 0.23
ZNF540Q8NDQ6 CROCCP2-202ENST00000412962 2773 ntBASIC16.52■□□□□ 0.23
ZNF540Q8NDQ6 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC16.52■□□□□ 0.23
ZNF540Q8NDQ6 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
ZNF540Q8NDQ6 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
ZNF540Q8NDQ6 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC16.51■□□□□ 0.23
ZNF540Q8NDQ6 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
ZNF540Q8NDQ6 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
ZNF540Q8NDQ6 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC16.51■□□□□ 0.23
ZNF540Q8NDQ6 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
ZNF540Q8NDQ6 AL138688.1-201ENST00000624851 1594 ntBASIC16.51■□□□□ 0.23
ZNF540Q8NDQ6 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
ZNF540Q8NDQ6 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ZNF540Q8NDQ6 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
ZNF540Q8NDQ6 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC16.51■□□□□ 0.23
ZNF540Q8NDQ6 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC16.51■□□□□ 0.23
ZNF540Q8NDQ6 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
ZNF540Q8NDQ6 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ZNF540Q8NDQ6 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ZNF540Q8NDQ6 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ZNF540Q8NDQ6 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC16.51■□□□□ 0.23
ZNF540Q8NDQ6 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC16.51■□□□□ 0.23
ZNF540Q8NDQ6 FSCN1P1-201ENST00000568912 1481 ntBASIC16.51■□□□□ 0.23
ZNF540Q8NDQ6 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ZNF540Q8NDQ6 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
ZNF540Q8NDQ6 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ZNF540Q8NDQ6 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC16.51■□□□□ 0.23
ZNF540Q8NDQ6 AC145285.6-201ENST00000604632 637 ntBASIC16.51■□□□□ 0.23
ZNF540Q8NDQ6 AC005363.2-201ENST00000618631 242 ntBASIC16.51■□□□□ 0.23
ZNF540Q8NDQ6 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ZNF540Q8NDQ6 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
ZNF540Q8NDQ6 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
ZNF540Q8NDQ6 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ZNF540Q8NDQ6 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
ZNF540Q8NDQ6 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC16.51■□□□□ 0.23
ZNF540Q8NDQ6 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
ZNF540Q8NDQ6 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
ZNF540Q8NDQ6 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
ZNF540Q8NDQ6 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
ZNF540Q8NDQ6 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
ZNF540Q8NDQ6 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
ZNF540Q8NDQ6 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC16.5■□□□□ 0.23
ZNF540Q8NDQ6 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC16.5■□□□□ 0.23
ZNF540Q8NDQ6 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ZNF540Q8NDQ6 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ZNF540Q8NDQ6 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ZNF540Q8NDQ6 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC16.5■□□□□ 0.23
ZNF540Q8NDQ6 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ZNF540Q8NDQ6 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC16.5■□□□□ 0.23
ZNF540Q8NDQ6 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ZNF540Q8NDQ6 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
ZNF540Q8NDQ6 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ZNF540Q8NDQ6 ENSA-205ENST00000361532 792 ntTSL 2 BASIC16.5■□□□□ 0.23
ZNF540Q8NDQ6 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC16.5■□□□□ 0.23
ZNF540Q8NDQ6 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ZNF540Q8NDQ6 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC16.5■□□□□ 0.23
ZNF540Q8NDQ6 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
ZNF540Q8NDQ6 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
ZNF540Q8NDQ6 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC16.5■□□□□ 0.23
ZNF540Q8NDQ6 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC16.5■□□□□ 0.23
ZNF540Q8NDQ6 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC16.5■□□□□ 0.23
ZNF540Q8NDQ6 NAPSB-206ENST00000562112 1266 ntBASIC16.5■□□□□ 0.23
ZNF540Q8NDQ6 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC16.5■□□□□ 0.23
ZNF540Q8NDQ6 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC16.5■□□□□ 0.23
ZNF540Q8NDQ6 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC16.5■□□□□ 0.23
ZNF540Q8NDQ6 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ZNF540Q8NDQ6 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ZNF540Q8NDQ6 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ZNF540Q8NDQ6 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
ZNF540Q8NDQ6 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
ZNF540Q8NDQ6 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC16.5■□□□□ 0.23
ZNF540Q8NDQ6 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
ZNF540Q8NDQ6 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC16.5■□□□□ 0.23
ZNF540Q8NDQ6 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ZNF540Q8NDQ6 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ZNF540Q8NDQ6 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ZNF540Q8NDQ6 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
ZNF540Q8NDQ6 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ZNF540Q8NDQ6 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC16.5■□□□□ 0.23
ZNF540Q8NDQ6 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ZNF540Q8NDQ6 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
ZNF540Q8NDQ6 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ZNF540Q8NDQ6 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
ZNF540Q8NDQ6 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
ZNF540Q8NDQ6 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ZNF540Q8NDQ6 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC16.49■□□□□ 0.23
ZNF540Q8NDQ6 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
ZNF540Q8NDQ6 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC16.49■□□□□ 0.23
ZNF540Q8NDQ6 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
ZNF540Q8NDQ6 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC16.49■□□□□ 0.23
ZNF540Q8NDQ6 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
ZNF540Q8NDQ6 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC16.49■□□□□ 0.23
ZNF540Q8NDQ6 AC099343.3-201ENST00000605834 2503 ntBASIC16.49■□□□□ 0.23
ZNF540Q8NDQ6 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
ZNF540Q8NDQ6 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
ZNF540Q8NDQ6 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
ZNF540Q8NDQ6 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms