Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC60Q8IWA6 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
CCDC60Q8IWA6 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC60Q8IWA6 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC60Q8IWA6 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC60Q8IWA6 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC60Q8IWA6 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC19.73■□□□□ 0.75
CCDC60Q8IWA6 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC19.73■□□□□ 0.75
CCDC60Q8IWA6 BX005266.1-201ENST00000473402 457 ntBASIC19.73■□□□□ 0.75
CCDC60Q8IWA6 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC60Q8IWA6 PNMT-203ENST00000581428 677 ntTSL 2 BASIC19.73■□□□□ 0.75
CCDC60Q8IWA6 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC19.73■□□□□ 0.75
CCDC60Q8IWA6 AC120114.3-201ENST00000611923 658 ntBASIC19.73■□□□□ 0.75
CCDC60Q8IWA6 AC073592.4-201ENST00000623827 446 ntBASIC19.73■□□□□ 0.75
CCDC60Q8IWA6 AC073592.5-201ENST00000624854 528 ntBASIC19.73■□□□□ 0.75
CCDC60Q8IWA6 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
CCDC60Q8IWA6 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC19.73■□□□□ 0.75
CCDC60Q8IWA6 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC60Q8IWA6 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC19.73■□□□□ 0.75
CCDC60Q8IWA6 AC135050.7-201ENST00000624508 2218 ntBASIC19.73■□□□□ 0.75
CCDC60Q8IWA6 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
CCDC60Q8IWA6 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC60Q8IWA6 AC004817.3-201ENST00000602957 2129 ntBASIC19.73■□□□□ 0.75
CCDC60Q8IWA6 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC60Q8IWA6 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC60Q8IWA6 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC60Q8IWA6 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC60Q8IWA6 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC60Q8IWA6 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
CCDC60Q8IWA6 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC19.73■□□□□ 0.75
CCDC60Q8IWA6 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC60Q8IWA6 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC19.73■□□□□ 0.75
CCDC60Q8IWA6 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CCDC60Q8IWA6 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC19.72■□□□□ 0.75
CCDC60Q8IWA6 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC19.72■□□□□ 0.75
CCDC60Q8IWA6 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC19.72■□□□□ 0.75
CCDC60Q8IWA6 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
CCDC60Q8IWA6 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC60Q8IWA6 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC60Q8IWA6 BX276092.7-203ENST00000637198 1536 ntBASIC19.72■□□□□ 0.75
CCDC60Q8IWA6 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC60Q8IWA6 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC19.72■□□□□ 0.75
CCDC60Q8IWA6 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC19.72■□□□□ 0.75
CCDC60Q8IWA6 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC60Q8IWA6 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC19.72■□□□□ 0.75
CCDC60Q8IWA6 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC60Q8IWA6 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC60Q8IWA6 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC19.72■□□□□ 0.75
CCDC60Q8IWA6 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC60Q8IWA6 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC19.72■□□□□ 0.75
CCDC60Q8IWA6 AL590627.1-203ENST00000421194 1026 ntBASIC19.72■□□□□ 0.75
CCDC60Q8IWA6 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC60Q8IWA6 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC19.72■□□□□ 0.75
CCDC60Q8IWA6 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC19.72■□□□□ 0.75
CCDC60Q8IWA6 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC19.72■□□□□ 0.75
CCDC60Q8IWA6 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC19.72■□□□□ 0.75
CCDC60Q8IWA6 BX640515.1-201ENST00000617215 977 ntBASIC19.72■□□□□ 0.75
CCDC60Q8IWA6 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC19.72■□□□□ 0.75
CCDC60Q8IWA6 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC19.72■□□□□ 0.75
CCDC60Q8IWA6 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC19.72■□□□□ 0.75
CCDC60Q8IWA6 PC-208ENST00000529047 1607 ntTSL 3 BASIC19.72■□□□□ 0.75
CCDC60Q8IWA6 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC60Q8IWA6 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC60Q8IWA6 IL9RP2-201ENST00000423948 1312 ntBASIC19.72■□□□□ 0.75
CCDC60Q8IWA6 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
CCDC60Q8IWA6 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC19.72■□□□□ 0.75
CCDC60Q8IWA6 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC60Q8IWA6 AC132938.5-201ENST00000624980 1813 ntBASIC19.72■□□□□ 0.75
CCDC60Q8IWA6 HLA-DQB1-201ENST00000374943 1656 ntBASIC19.71■□□□□ 0.75
CCDC60Q8IWA6 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC60Q8IWA6 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC19.71■□□□□ 0.75
CCDC60Q8IWA6 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
CCDC60Q8IWA6 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC60Q8IWA6 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC19.71■□□□□ 0.75
CCDC60Q8IWA6 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC19.71■□□□□ 0.75
CCDC60Q8IWA6 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC19.71■□□□□ 0.75
CCDC60Q8IWA6 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
CCDC60Q8IWA6 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC19.71■□□□□ 0.75
CCDC60Q8IWA6 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC60Q8IWA6 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
CCDC60Q8IWA6 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
CCDC60Q8IWA6 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC19.71■□□□□ 0.75
CCDC60Q8IWA6 RAB17-203ENST00000409576 466 ntTSL 3 BASIC19.71■□□□□ 0.75
CCDC60Q8IWA6 SPDYE21P-201ENST00000413323 827 ntBASIC19.71■□□□□ 0.75
CCDC60Q8IWA6 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC60Q8IWA6 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC19.71■□□□□ 0.75
CCDC60Q8IWA6 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC60Q8IWA6 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC19.71■□□□□ 0.75
CCDC60Q8IWA6 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC60Q8IWA6 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC19.71■□□□□ 0.75
CCDC60Q8IWA6 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
CCDC60Q8IWA6 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC19.71■□□□□ 0.75
CCDC60Q8IWA6 MNT-208ENST00000575394 606 ntTSL 4 BASIC19.71■□□□□ 0.75
CCDC60Q8IWA6 MTDHP4-201ENST00000600287 670 ntBASIC19.71■□□□□ 0.75
CCDC60Q8IWA6 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC60Q8IWA6 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC60Q8IWA6 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC19.71■□□□□ 0.75
CCDC60Q8IWA6 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC19.71■□□□□ 0.75
CCDC60Q8IWA6 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
CCDC60Q8IWA6 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 55.8 ms