Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC20.36■□□□□ 0.85
SH3RF1Q7Z6J0 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC20.36■□□□□ 0.85
SH3RF1Q7Z6J0 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC20.36■□□□□ 0.85
SH3RF1Q7Z6J0 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC20.36■□□□□ 0.85
SH3RF1Q7Z6J0 IRF8-202ENST00000562492 946 ntTSL 3 BASIC20.36■□□□□ 0.85
SH3RF1Q7Z6J0 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC20.36■□□□□ 0.85
SH3RF1Q7Z6J0 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC20.36■□□□□ 0.85
SH3RF1Q7Z6J0 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SH3RF1Q7Z6J0 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SH3RF1Q7Z6J0 FAM215A-202ENST00000632077 792 ntBASIC20.36■□□□□ 0.85
SH3RF1Q7Z6J0 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SH3RF1Q7Z6J0 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC20.36■□□□□ 0.85
SH3RF1Q7Z6J0 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC20.36■□□□□ 0.85
SH3RF1Q7Z6J0 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC20.36■□□□□ 0.85
SH3RF1Q7Z6J0 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SH3RF1Q7Z6J0 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SH3RF1Q7Z6J0 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
SH3RF1Q7Z6J0 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC20.35■□□□□ 0.85
SH3RF1Q7Z6J0 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC20.35■□□□□ 0.85
SH3RF1Q7Z6J0 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SH3RF1Q7Z6J0 ZNF259P1-201ENST00000407656 1365 ntBASIC20.35■□□□□ 0.85
SH3RF1Q7Z6J0 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC20.35■□□□□ 0.85
SH3RF1Q7Z6J0 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SH3RF1Q7Z6J0 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
SH3RF1Q7Z6J0 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
SH3RF1Q7Z6J0 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
SH3RF1Q7Z6J0 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SH3RF1Q7Z6J0 GGCT-205ENST00000409436 954 ntTSL 3 BASIC20.35■□□□□ 0.85
SH3RF1Q7Z6J0 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
SH3RF1Q7Z6J0 PGAM5P1-201ENST00000518923 814 ntBASIC20.35■□□□□ 0.85
SH3RF1Q7Z6J0 DUTP2-201ENST00000519164 463 ntBASIC20.35■□□□□ 0.85
SH3RF1Q7Z6J0 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC20.35■□□□□ 0.85
SH3RF1Q7Z6J0 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC20.35■□□□□ 0.85
SH3RF1Q7Z6J0 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC20.35■□□□□ 0.85
SH3RF1Q7Z6J0 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC20.35■□□□□ 0.85
SH3RF1Q7Z6J0 LINC02084-201ENST00000606069 1096 ntBASIC20.35■□□□□ 0.85
SH3RF1Q7Z6J0 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC20.35■□□□□ 0.85
SH3RF1Q7Z6J0 AL139424.1-201ENST00000607572 797 ntBASIC20.35■□□□□ 0.85
SH3RF1Q7Z6J0 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC20.35■□□□□ 0.85
SH3RF1Q7Z6J0 AC116407.3-201ENST00000623905 1129 ntBASIC20.35■□□□□ 0.85
SH3RF1Q7Z6J0 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC20.35■□□□□ 0.85
SH3RF1Q7Z6J0 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
SH3RF1Q7Z6J0 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
SH3RF1Q7Z6J0 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
SH3RF1Q7Z6J0 STX6-204ENST00000542060 4809 ntTSL 2 BASIC20.35■□□□□ 0.85
SH3RF1Q7Z6J0 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SH3RF1Q7Z6J0 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
SH3RF1Q7Z6J0 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
SH3RF1Q7Z6J0 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
SH3RF1Q7Z6J0 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
SH3RF1Q7Z6J0 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
SH3RF1Q7Z6J0 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC20.34■□□□□ 0.85
SH3RF1Q7Z6J0 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SH3RF1Q7Z6J0 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
SH3RF1Q7Z6J0 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SH3RF1Q7Z6J0 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
SH3RF1Q7Z6J0 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
SH3RF1Q7Z6J0 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC20.34■□□□□ 0.85
SH3RF1Q7Z6J0 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC20.34■□□□□ 0.85
SH3RF1Q7Z6J0 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC20.34■□□□□ 0.85
SH3RF1Q7Z6J0 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SH3RF1Q7Z6J0 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SH3RF1Q7Z6J0 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SH3RF1Q7Z6J0 AC096582.2-201ENST00000510860 516 ntBASIC20.34■□□□□ 0.85
SH3RF1Q7Z6J0 PRKN-208ENST00000610470 531 ntTSL 2 BASIC20.34■□□□□ 0.85
SH3RF1Q7Z6J0 PRKN-209ENST00000612485 225 ntTSL 5 BASIC20.34■□□□□ 0.85
SH3RF1Q7Z6J0 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SH3RF1Q7Z6J0 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SH3RF1Q7Z6J0 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
SH3RF1Q7Z6J0 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SH3RF1Q7Z6J0 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC20.34■□□□□ 0.85
SH3RF1Q7Z6J0 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC20.34■□□□□ 0.85
SH3RF1Q7Z6J0 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
SH3RF1Q7Z6J0 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
SH3RF1Q7Z6J0 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SH3RF1Q7Z6J0 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
SH3RF1Q7Z6J0 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SH3RF1Q7Z6J0 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SH3RF1Q7Z6J0 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SH3RF1Q7Z6J0 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SH3RF1Q7Z6J0 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SH3RF1Q7Z6J0 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
SH3RF1Q7Z6J0 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SH3RF1Q7Z6J0 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SH3RF1Q7Z6J0 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SH3RF1Q7Z6J0 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC20.33■□□□□ 0.85
SH3RF1Q7Z6J0 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC20.33■□□□□ 0.85
SH3RF1Q7Z6J0 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC20.33■□□□□ 0.85
SH3RF1Q7Z6J0 AL355385.1-201ENST00000606123 409 ntBASIC20.33■□□□□ 0.85
SH3RF1Q7Z6J0 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.84
SH3RF1Q7Z6J0 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC20.33■□□□□ 0.84
SH3RF1Q7Z6J0 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SH3RF1Q7Z6J0 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SH3RF1Q7Z6J0 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.84
SH3RF1Q7Z6J0 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC20.33■□□□□ 0.84
SH3RF1Q7Z6J0 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SH3RF1Q7Z6J0 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
SH3RF1Q7Z6J0 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SH3RF1Q7Z6J0 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC20.32■□□□□ 0.84
SH3RF1Q7Z6J0 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms