Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC24.45■■□□□ 1.5
MSH6P52701 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC24.45■■□□□ 1.5
MSH6P52701 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC24.45■■□□□ 1.5
MSH6P52701 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC24.45■■□□□ 1.5
MSH6P52701 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
MSH6P52701 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC24.45■■□□□ 1.5
MSH6P52701 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC24.45■■□□□ 1.5
MSH6P52701 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC24.45■■□□□ 1.5
MSH6P52701 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
MSH6P52701 GRAP-202ENST00000395635 834 ntTSL 2 BASIC24.44■■□□□ 1.5
MSH6P52701 CENPM-205ENST00000404067 905 ntTSL 3 BASIC24.44■■□□□ 1.5
MSH6P52701 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC24.44■■□□□ 1.5
MSH6P52701 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
MSH6P52701 AC008761.3-201ENST00000624803 892 ntBASIC24.44■■□□□ 1.5
MSH6P52701 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
MSH6P52701 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC24.44■■□□□ 1.5
MSH6P52701 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
MSH6P52701 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
MSH6P52701 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC24.44■■□□□ 1.5
MSH6P52701 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC24.44■■□□□ 1.5
MSH6P52701 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
MSH6P52701 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC24.44■■□□□ 1.5
MSH6P52701 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC24.44■■□□□ 1.5
MSH6P52701 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
MSH6P52701 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
MSH6P52701 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
MSH6P52701 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC24.43■■□□□ 1.5
MSH6P52701 OR8S1-201ENST00000310194 1080 ntBASIC24.43■■□□□ 1.5
MSH6P52701 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC24.43■■□□□ 1.5
MSH6P52701 VMA21-202ENST00000370361 693 ntTSL 5 BASIC24.43■■□□□ 1.5
MSH6P52701 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC24.43■■□□□ 1.5
MSH6P52701 MIR943-201ENST00000401286 94 ntBASIC24.43■■□□□ 1.5
MSH6P52701 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC24.43■■□□□ 1.5
MSH6P52701 HNRNPA1P40-201ENST00000426371 1278 ntBASIC24.43■■□□□ 1.5
MSH6P52701 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC24.43■■□□□ 1.5
MSH6P52701 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC24.43■■□□□ 1.5
MSH6P52701 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
MSH6P52701 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
MSH6P52701 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC24.43■■□□□ 1.5
MSH6P52701 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
MSH6P52701 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
MSH6P52701 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC24.43■■□□□ 1.5
MSH6P52701 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
MSH6P52701 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC24.43■■□□□ 1.5
MSH6P52701 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC24.43■■□□□ 1.5
MSH6P52701 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC24.43■■□□□ 1.5
MSH6P52701 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
MSH6P52701 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
MSH6P52701 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
MSH6P52701 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC24.43■■□□□ 1.5
MSH6P52701 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC24.43■■□□□ 1.5
MSH6P52701 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
MSH6P52701 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
MSH6P52701 AL355306.1-201ENST00000415580 579 ntBASIC24.42■■□□□ 1.5
MSH6P52701 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC24.42■■□□□ 1.5
MSH6P52701 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC24.42■■□□□ 1.5
MSH6P52701 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
MSH6P52701 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC24.42■■□□□ 1.5
MSH6P52701 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
MSH6P52701 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC24.42■■□□□ 1.5
MSH6P52701 AC026120.1-201ENST00000611536 926 ntBASIC24.42■■□□□ 1.5
MSH6P52701 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
MSH6P52701 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC24.42■■□□□ 1.5
MSH6P52701 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC24.42■■□□□ 1.5
MSH6P52701 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC24.42■■□□□ 1.5
MSH6P52701 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC24.42■■□□□ 1.5
MSH6P52701 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC24.42■■□□□ 1.5
MSH6P52701 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC24.42■■□□□ 1.5
MSH6P52701 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC24.42■■□□□ 1.5
MSH6P52701 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
MSH6P52701 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
MSH6P52701 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
MSH6P52701 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
MSH6P52701 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
MSH6P52701 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
MSH6P52701 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
MSH6P52701 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC24.42■■□□□ 1.5
MSH6P52701 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC24.42■■□□□ 1.5
MSH6P52701 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC24.42■■□□□ 1.5
MSH6P52701 AP005018.1-201ENST00000525475 301 ntBASIC24.42■■□□□ 1.5
MSH6P52701 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC24.42■■□□□ 1.5
MSH6P52701 COX11-202ENST00000571584 1108 ntTSL 2 BASIC24.42■■□□□ 1.5
MSH6P52701 CYB561-216ENST00000582297 897 ntTSL 3 BASIC24.42■■□□□ 1.5
MSH6P52701 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC24.42■■□□□ 1.5
MSH6P52701 LINC02560-201ENST00000596379 459 ntBASIC24.42■■□□□ 1.5
MSH6P52701 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC24.42■■□□□ 1.5
MSH6P52701 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC24.42■■□□□ 1.5
MSH6P52701 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
MSH6P52701 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC24.41■■□□□ 1.5
MSH6P52701 AC116562.4-201ENST00000641316 2276 ntBASIC24.41■■□□□ 1.5
MSH6P52701 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
MSH6P52701 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
MSH6P52701 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC24.41■■□□□ 1.5
MSH6P52701 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC24.41■■□□□ 1.5
MSH6P52701 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
MSH6P52701 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
MSH6P52701 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC24.41■■□□□ 1.5
MSH6P52701 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC24.41■■□□□ 1.5
MSH6P52701 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC24.41■■□□□ 1.5
MSH6P52701 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms