Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
HDAC3O15379 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC17.33■□□□□ 0.37
HDAC3O15379 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
HDAC3O15379 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC17.33■□□□□ 0.36
HDAC3O15379 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC17.33■□□□□ 0.36
HDAC3O15379 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC17.33■□□□□ 0.36
HDAC3O15379 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HDAC3O15379 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
HDAC3O15379 ITM2C-210ENST00000620962 501 ntBASIC17.33■□□□□ 0.36
HDAC3O15379 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC17.33■□□□□ 0.36
HDAC3O15379 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC17.33■□□□□ 0.36
HDAC3O15379 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HDAC3O15379 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC17.33■□□□□ 0.36
HDAC3O15379 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
HDAC3O15379 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HDAC3O15379 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
HDAC3O15379 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
HDAC3O15379 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HDAC3O15379 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC17.33■□□□□ 0.36
HDAC3O15379 AC106886.4-201ENST00000623557 2502 ntBASIC17.32■□□□□ 0.36
HDAC3O15379 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC17.32■□□□□ 0.36
HDAC3O15379 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HDAC3O15379 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
HDAC3O15379 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HDAC3O15379 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
HDAC3O15379 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HDAC3O15379 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HDAC3O15379 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC17.32■□□□□ 0.36
HDAC3O15379 UNC93B2-201ENST00000285383 730 ntBASIC17.32■□□□□ 0.36
HDAC3O15379 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HDAC3O15379 PEX7-202ENST00000367756 680 ntTSL 3 BASIC17.32■□□□□ 0.36
HDAC3O15379 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HDAC3O15379 GXYLT1P6-201ENST00000456472 1187 ntBASIC17.32■□□□□ 0.36
HDAC3O15379 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HDAC3O15379 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
HDAC3O15379 REXO2-216ENST00000544196 452 ntTSL 3 BASIC17.32■□□□□ 0.36
HDAC3O15379 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HDAC3O15379 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC17.32■□□□□ 0.36
HDAC3O15379 AP003071.4-201ENST00000562276 1284 ntBASIC17.32■□□□□ 0.36
HDAC3O15379 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
HDAC3O15379 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC17.32■□□□□ 0.36
HDAC3O15379 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
HDAC3O15379 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
HDAC3O15379 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
HDAC3O15379 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
HDAC3O15379 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
HDAC3O15379 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC17.32■□□□□ 0.36
HDAC3O15379 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
HDAC3O15379 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
HDAC3O15379 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
HDAC3O15379 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HDAC3O15379 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HDAC3O15379 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC17.31■□□□□ 0.36
HDAC3O15379 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HDAC3O15379 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HDAC3O15379 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HDAC3O15379 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC17.31■□□□□ 0.36
HDAC3O15379 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
HDAC3O15379 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HDAC3O15379 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HDAC3O15379 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC17.31■□□□□ 0.36
HDAC3O15379 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HDAC3O15379 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
HDAC3O15379 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
HDAC3O15379 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
HDAC3O15379 UBE2SP1-201ENST00000450587 669 ntBASIC17.31■□□□□ 0.36
HDAC3O15379 FAM201B-201ENST00000458407 597 ntBASIC17.31■□□□□ 0.36
HDAC3O15379 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC17.31■□□□□ 0.36
HDAC3O15379 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC17.31■□□□□ 0.36
HDAC3O15379 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC17.31■□□□□ 0.36
HDAC3O15379 AC010653.2-201ENST00000623505 997 ntBASIC17.31■□□□□ 0.36
HDAC3O15379 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HDAC3O15379 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HDAC3O15379 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
HDAC3O15379 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
HDAC3O15379 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HDAC3O15379 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
HDAC3O15379 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC17.31■□□□□ 0.36
HDAC3O15379 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HDAC3O15379 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
HDAC3O15379 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HDAC3O15379 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
HDAC3O15379 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HDAC3O15379 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HDAC3O15379 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
HDAC3O15379 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HDAC3O15379 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
HDAC3O15379 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HDAC3O15379 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
HDAC3O15379 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC17.3■□□□□ 0.36
HDAC3O15379 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
HDAC3O15379 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
HDAC3O15379 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC17.3■□□□□ 0.36
HDAC3O15379 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
HDAC3O15379 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
HDAC3O15379 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC17.3■□□□□ 0.36
HDAC3O15379 RBM17P1-201ENST00000453646 1190 ntBASIC17.3■□□□□ 0.36
HDAC3O15379 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC17.3■□□□□ 0.36
HDAC3O15379 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC17.3■□□□□ 0.36
HDAC3O15379 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 82.3 ms