Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 MRPL11-205ENST00000528272 506 ntTSL 37.74□□□□□ -1.174e-7■■■■□ 24.7
YBX3P16989 BRPF1-202ENST00000420291 860 ntTSL 329.49■■■□□ 2.313e-7■■■■□ 24.7
YBX3P16989 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.453e-7■■■■□ 24.7
YBX3P16989 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.413e-7■■■■□ 24.7
YBX3P16989 BRPF1-205ENST00000433861 4304 ntTSL 2 BASIC15.12■□□□□ 0.013e-7■■■■□ 24.7
YBX3P16989 BRPF1-204ENST00000426583 534 ntTSL 413.29□□□□□ -0.283e-7■■■■□ 24.7
YBX3P16989 BRPF1-206ENST00000457855 4308 ntAPPRIS P3 TSL 2 BASIC9.12□□□□□ -0.953e-7■■■■□ 24.7
YBX3P16989 NUMA1-213ENST00000537217 2331 ntAPPRIS ALT2 TSL 1 (best)19.14■□□□□ 0.669e-7■■■■□ 24.7
YBX3P16989 NUMA1-224ENST00000543009 874 ntAPPRIS ALT2 TSL 318.54■□□□□ 0.569e-7■■■■□ 24.7
YBX3P16989 NUMA1-215ENST00000537930 582 ntAPPRIS ALT2 TSL 515.66■□□□□ 0.19e-7■■■■□ 24.7
YBX3P16989 NUMA1-226ENST00000543937 911 ntAPPRIS ALT2 TSL 515□□□□□ -0.019e-7■■■■□ 24.7
YBX3P16989 NUMA1-212ENST00000536119 1686 ntTSL 214.9□□□□□ -0.029e-7■■■■□ 24.7
YBX3P16989 NUMA1-227ENST00000544129 600 ntAPPRIS ALT2 TSL 514.55□□□□□ -0.089e-7■■■■□ 24.7
YBX3P16989 NUMA1-218ENST00000540843 1969 ntTSL 214.16□□□□□ -0.149e-7■■■■□ 24.7
YBX3P16989 NUMA1-208ENST00000535087 606 ntAPPRIS ALT2 TSL 414.05□□□□□ -0.169e-7■■■■□ 24.7
YBX3P16989 NUMA1-223ENST00000542977 2766 ntAPPRIS ALT2 TSL 213.8□□□□□ -0.29e-7■■■■□ 24.7
YBX3P16989 NUMA1-233ENST00000616538 6998 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.279e-7■■■■□ 24.7
YBX3P16989 NUMA1-234ENST00000620566 7012 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.289e-7■■■■□ 24.7
YBX3P16989 NUMA1-228ENST00000544238 792 ntAPPRIS ALT2 TSL 312.97□□□□□ -0.339e-7■■■■□ 24.7
YBX3P16989 NUMA1-205ENST00000393695 7343 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.359e-7■■■■□ 24.7
YBX3P16989 NUMA1-211ENST00000535947 576 ntAPPRIS ALT2 TSL 411.89□□□□□ -0.519e-7■■■■□ 24.7
YBX3P16989 NUMA1-202ENST00000358965 7227 ntAPPRIS ALT2 TSL 2 BASIC11.22□□□□□ -0.619e-7■■■■□ 24.7
YBX3P16989 NUMA1-207ENST00000534987 2211 ntTSL 210.82□□□□□ -0.689e-7■■■■□ 24.7
YBX3P16989 NUMA1-201ENST00000351960 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC9.92□□□□□ -0.829e-7■■■■□ 24.7
YBX3P16989 NUMA1-206ENST00000534971 878 ntTSL 29.42□□□□□ -0.99e-7■■■■□ 24.7
YBX3P16989 NUMA1-232ENST00000613205 3940 ntAPPRIS ALT2 TSL 5 BASIC8.71□□□□□ -1.029e-7■■■■□ 24.7
YBX3P16989 UBE2N-203ENST00000549490 676 ntTSL 213.02□□□□□ -0.333e-9■■■■□ 24.7
YBX3P16989 UBE2N-206ENST00000552442 607 ntTSL 5 BASIC11.9□□□□□ -0.53e-9■■■■□ 24.7
YBX3P16989 UBE2N-204ENST00000549833 960 ntTSL 3 BASIC7.97□□□□□ -1.133e-9■■■■□ 24.7
YBX3P16989 PLEKHA2-203ENST00000519640 565 ntTSL 527.17■■□□□ 1.942e-7■■■■□ 24.7
YBX3P16989 SFMBT2-202ENST00000379711 692 ntTSL 5 BASIC17.67■□□□□ 0.422e-6■■■■□ 24.7
YBX3P16989 SFMBT2-203ENST00000379713 2402 ntTSL 2 BASIC13.53□□□□□ -0.242e-6■■■■□ 24.7
YBX3P16989 SFMBT2-204ENST00000397167 8024 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.412e-6■■■■□ 24.7
YBX3P16989 SFMBT2-201ENST00000361972 7922 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.492e-6■■■■□ 24.7
YBX3P16989 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC26.27■■□□□ 1.86e-7■■■■□ 24.7
YBX3P16989 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC24.78■■□□□ 1.566e-7■■■■□ 24.7
YBX3P16989 TBC1D22A-204ENST00000394449 2048 ntTSL 522.88■■□□□ 1.256e-7■■■■□ 24.7
YBX3P16989 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC16.05■□□□□ 0.166e-7■■■■□ 24.7
YBX3P16989 TBC1D22A-207ENST00000441162 2636 ntTSL 215.56■□□□□ 0.086e-7■■■■□ 24.7
YBX3P16989 TBC1D22A-201ENST00000337137 3787 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.086e-7■■■■□ 24.7
YBX3P16989 TBC1D22A-203ENST00000380995 3934 ntTSL 1 (best) BASIC13.87□□□□□ -0.196e-7■■■■□ 24.7
YBX3P16989 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC22.57■■□□□ 1.23e-7■■■■□ 24.6
YBX3P16989 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.633e-7■■■■□ 24.6
YBX3P16989 GPN3-203ENST00000543199 1604 ntTSL 5 BASIC17.68■□□□□ 0.423e-7■■■■□ 24.6
YBX3P16989 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC23.04■■□□□ 1.283e-7■■■■□ 24.6
YBX3P16989 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC18.52■□□□□ 0.553e-7■■■■□ 24.6
YBX3P16989 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.463e-7■■■■□ 24.6
YBX3P16989 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.163e-7■■■■□ 24.6
YBX3P16989 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC15.88■□□□□ 0.133e-7■■■■□ 24.6
YBX3P16989 ZNF7-205ENST00000528017 5641 ntTSL 1 (best)10.22□□□□□ -0.773e-7■■■■□ 24.6
YBX3P16989 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC22.38■■□□□ 1.171e-7■■■■□ 24.6
YBX3P16989 BAX-208ENST00000503726 488 ntTSL 221.34■■□□□ 1.011e-7■■■■□ 24.6
YBX3P16989 BAX-210ENST00000513217 869 ntTSL 219.37■□□□□ 0.691e-7■■■■□ 24.6
YBX3P16989 Z97192.2-201ENST00000393264 2379 ntTSL 2 BASIC14.78□□□□□ -0.043e-7■■■■□ 24.6
YBX3P16989 SEPT9-245ENST00000592481 1291 ntTSL 525.17■■□□□ 1.623e-7■■■■□ 24.6
YBX3P16989 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC24.08■■□□□ 1.453e-7■■■■□ 24.6
YBX3P16989 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC23.83■■□□□ 1.43e-7■■■■□ 24.6
YBX3P16989 SEPT9-215ENST00000586521 601 ntTSL 422.25■■□□□ 1.153e-7■■■■□ 24.6
YBX3P16989 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.973e-7■■■■□ 24.6
YBX3P16989 SEPT9-221ENST00000588958 879 ntTSL 220.72■□□□□ 0.913e-7■■■■□ 24.6
YBX3P16989 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC19.56■□□□□ 0.723e-7■■■■□ 24.6
YBX3P16989 SEPT9-210ENST00000585929 906 ntTSL 419.55■□□□□ 0.723e-7■■■■□ 24.6
YBX3P16989 SEPT9-212ENST00000586128 752 ntTSL 419.2■□□□□ 0.663e-7■■■■□ 24.6
YBX3P16989 SEPT9-239ENST00000591704 749 ntTSL 215.76■□□□□ 0.113e-7■■■■□ 24.6
YBX3P16989 SEPT9-213ENST00000586433 569 ntTSL 415.75■□□□□ 0.113e-7■■■■□ 24.6
YBX3P16989 SEPT9-247ENST00000593189 817 ntTSL 515.5■□□□□ 0.073e-7■■■■□ 24.6
YBX3P16989 SEPT9-238ENST00000591472 555 ntTSL 414.9□□□□□ -0.023e-7■■■■□ 24.6
YBX3P16989 SEPT9-235ENST00000591020 582 ntTSL 413.94□□□□□ -0.183e-7■■■■□ 24.6
YBX3P16989 SEPT9-234ENST00000590938 611 ntTSL 413.29□□□□□ -0.283e-7■■■■□ 24.6
YBX3P16989 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.12e-8■■■■□ 24.6
YBX3P16989 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.012e-8■■■■□ 24.6
YBX3P16989 EML4-202ENST00000401738 3797 ntAPPRIS ALT2 TSL 5 BASIC11.59□□□□□ -0.552e-8■■■■□ 24.6
YBX3P16989 EML4-204ENST00000406175 4622 ntTSL 1 (best)5.72□□□□□ -1.492e-8■■■■□ 24.6
YBX3P16989 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.216e-7■■■■□ 24.6
YBX3P16989 BCKDK-208ENST00000567530 1796 ntTSL 524.81■■□□□ 1.564e-8■■■■□ 24.6
YBX3P16989 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.434e-8■■■■□ 24.6
YBX3P16989 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC23.26■■□□□ 1.314e-8■■■■□ 24.6
YBX3P16989 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC22.71■■□□□ 1.234e-8■■■■□ 24.6
YBX3P16989 BCKDK-205ENST00000484226 754 ntTSL 317.38■□□□□ 0.374e-8■■■■□ 24.6
YBX3P16989 BCKDK-207ENST00000566568 2558 ntTSL 516.47■□□□□ 0.234e-8■■■■□ 24.6
YBX3P16989 BCKDK-204ENST00000394951 2164 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.214e-8■■■■□ 24.6
YBX3P16989 STARD7-204ENST00000479456 2949 ntTSL 27.08□□□□□ -1.284e-7■■■■□ 24.6
YBX3P16989 RPL23-205ENST00000470646 333 ntTSL 316.94■□□□□ 0.34e-27■■■■□ 24.5
YBX3P16989 RPL23-207ENST00000577407 615 ntTSL 2 BASIC15.79■□□□□ 0.124e-27■■■■□ 24.5
YBX3P16989 RPL23-203ENST00000394332 625 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.124e-27■■■■□ 24.5
YBX3P16989 RPL23-202ENST00000378096 392 ntTSL 315.79■□□□□ 0.124e-27■■■■□ 24.5
YBX3P16989 RPL23-204ENST00000394333 444 ntTSL 2 BASIC14.98□□□□□ -0.014e-27■■■■□ 24.5
YBX3P16989 RPL23-201ENST00000245857 588 ntTSL 3 BASIC12.91□□□□□ -0.344e-27■■■■□ 24.5
YBX3P16989 RPL23-206ENST00000479035 2821 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.524e-27■■■■□ 24.5
YBX3P16989 RPL23-211ENST00000584912 2779 ntTSL 1 (best)9.54□□□□□ -0.884e-27■■■■□ 24.5
YBX3P16989 DCTN2-219ENST00000550988 795 ntTSL 412.49□□□□□ -0.413e-7■■■■□ 24.5
YBX3P16989 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.552e-10■■■■□ 24.5
YBX3P16989 MRPS15-202ENST00000462067 1612 ntTSL 211.93□□□□□ -0.52e-10■■■■□ 24.5
YBX3P16989 MLF1-215ENST00000498592 707 ntTSL 325.06■■□□□ 1.65e-7■■■■□ 24.5
YBX3P16989 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC22.96■■□□□ 1.275e-7■■■■□ 24.5
YBX3P16989 MLF1-212ENST00000491767 787 ntTSL 1 (best)22.49■■□□□ 1.195e-7■■■■□ 24.5
YBX3P16989 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC18.58■□□□□ 0.565e-7■■■■□ 24.5
YBX3P16989 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.395e-7■■■■□ 24.5
YBX3P16989 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC17.48■□□□□ 0.395e-7■■■■□ 24.5
YBX3P16989 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC17.11■□□□□ 0.335e-7■■■■□ 24.5
Retrieved 100 of 29,075 protein–RNA pairs in 504.5 ms