Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VPS4AQ9UN37 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC17.28■□□□□ 0.36
VPS4AQ9UN37 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VPS4AQ9UN37 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
VPS4AQ9UN37 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VPS4AQ9UN37 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VPS4AQ9UN37 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VPS4AQ9UN37 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VPS4AQ9UN37 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VPS4AQ9UN37 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VPS4AQ9UN37 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VPS4AQ9UN37 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC17.28■□□□□ 0.36
VPS4AQ9UN37 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC17.28■□□□□ 0.36
VPS4AQ9UN37 PVRIG2P-201ENST00000435460 978 ntBASIC17.28■□□□□ 0.36
VPS4AQ9UN37 AP000347.1-202ENST00000435868 847 ntBASIC17.28■□□□□ 0.36
VPS4AQ9UN37 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VPS4AQ9UN37 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VPS4AQ9UN37 CALM1-205ENST00000553542 877 ntTSL 5 BASIC17.28■□□□□ 0.36
VPS4AQ9UN37 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC17.28■□□□□ 0.36
VPS4AQ9UN37 MNT-208ENST00000575394 606 ntTSL 4 BASIC17.28■□□□□ 0.36
VPS4AQ9UN37 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VPS4AQ9UN37 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC17.28■□□□□ 0.36
VPS4AQ9UN37 AC006538.3-201ENST00000612495 578 ntBASIC17.28■□□□□ 0.36
VPS4AQ9UN37 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VPS4AQ9UN37 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC17.28■□□□□ 0.36
VPS4AQ9UN37 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VPS4AQ9UN37 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC17.28■□□□□ 0.36
VPS4AQ9UN37 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC17.28■□□□□ 0.36
VPS4AQ9UN37 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC17.28■□□□□ 0.36
VPS4AQ9UN37 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
VPS4AQ9UN37 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
VPS4AQ9UN37 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC17.28■□□□□ 0.36
VPS4AQ9UN37 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
VPS4AQ9UN37 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
VPS4AQ9UN37 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VPS4AQ9UN37 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VPS4AQ9UN37 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VPS4AQ9UN37 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC17.27■□□□□ 0.36
VPS4AQ9UN37 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
VPS4AQ9UN37 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VPS4AQ9UN37 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VPS4AQ9UN37 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
VPS4AQ9UN37 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VPS4AQ9UN37 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VPS4AQ9UN37 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
VPS4AQ9UN37 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
VPS4AQ9UN37 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VPS4AQ9UN37 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VPS4AQ9UN37 GAD2-202ENST00000376248 680 ntTSL 5 BASIC17.27■□□□□ 0.36
VPS4AQ9UN37 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
VPS4AQ9UN37 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC17.27■□□□□ 0.36
VPS4AQ9UN37 BX276092.5-203ENST00000456199 560 ntBASIC17.27■□□□□ 0.36
VPS4AQ9UN37 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC17.27■□□□□ 0.36
VPS4AQ9UN37 AC009065.1-201ENST00000564055 1225 ntBASIC17.27■□□□□ 0.36
VPS4AQ9UN37 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC17.27■□□□□ 0.36
VPS4AQ9UN37 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC17.27■□□□□ 0.36
VPS4AQ9UN37 NT5C-210ENST00000582160 860 ntTSL 2 BASIC17.27■□□□□ 0.36
VPS4AQ9UN37 AL121672.3-201ENST00000608644 468 ntBASIC17.27■□□□□ 0.36
VPS4AQ9UN37 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC17.27■□□□□ 0.36
VPS4AQ9UN37 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
VPS4AQ9UN37 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
VPS4AQ9UN37 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
VPS4AQ9UN37 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
VPS4AQ9UN37 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
VPS4AQ9UN37 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
VPS4AQ9UN37 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS4AQ9UN37 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC17.26■□□□□ 0.35
VPS4AQ9UN37 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS4AQ9UN37 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS4AQ9UN37 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
VPS4AQ9UN37 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS4AQ9UN37 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS4AQ9UN37 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC17.26■□□□□ 0.35
VPS4AQ9UN37 TSSC2-201ENST00000450217 709 ntBASIC17.26■□□□□ 0.35
VPS4AQ9UN37 CNP-204ENST00000472031 1019 ntTSL 2 BASIC17.26■□□□□ 0.35
VPS4AQ9UN37 SKP2-204ENST00000508514 821 ntTSL 3 BASIC17.26■□□□□ 0.35
VPS4AQ9UN37 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC17.26■□□□□ 0.35
VPS4AQ9UN37 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC17.26■□□□□ 0.35
VPS4AQ9UN37 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC17.26■□□□□ 0.35
VPS4AQ9UN37 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC17.26■□□□□ 0.35
VPS4AQ9UN37 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
VPS4AQ9UN37 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS4AQ9UN37 AC023511.2-201ENST00000618803 211 ntBASIC17.26■□□□□ 0.35
VPS4AQ9UN37 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC17.26■□□□□ 0.35
VPS4AQ9UN37 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS4AQ9UN37 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS4AQ9UN37 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS4AQ9UN37 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS4AQ9UN37 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
VPS4AQ9UN37 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS4AQ9UN37 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
VPS4AQ9UN37 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS4AQ9UN37 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC17.26■□□□□ 0.35
VPS4AQ9UN37 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC17.26■□□□□ 0.35
VPS4AQ9UN37 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS4AQ9UN37 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
VPS4AQ9UN37 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS4AQ9UN37 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS4AQ9UN37 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS4AQ9UN37 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms