Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC15.38■□□□□ 0.05
CHMP1AQ9HD42 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC15.38■□□□□ 0.05
CHMP1AQ9HD42 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC15.38■□□□□ 0.05
CHMP1AQ9HD42 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CHMP1AQ9HD42 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC15.38■□□□□ 0.05
CHMP1AQ9HD42 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
CHMP1AQ9HD42 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CHMP1AQ9HD42 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
CHMP1AQ9HD42 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CHMP1AQ9HD42 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CHMP1AQ9HD42 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CHMP1AQ9HD42 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CHMP1AQ9HD42 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CHMP1AQ9HD42 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC15.38■□□□□ 0.05
CHMP1AQ9HD42 PEX7-202ENST00000367756 680 ntTSL 3 BASIC15.38■□□□□ 0.05
CHMP1AQ9HD42 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
CHMP1AQ9HD42 MIR149-201ENST00000384879 89 ntBASIC15.38■□□□□ 0.05
CHMP1AQ9HD42 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CHMP1AQ9HD42 AL355355.2-201ENST00000442321 338 ntBASIC15.38■□□□□ 0.05
CHMP1AQ9HD42 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC15.38■□□□□ 0.05
CHMP1AQ9HD42 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
CHMP1AQ9HD42 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
CHMP1AQ9HD42 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC15.38■□□□□ 0.05
CHMP1AQ9HD42 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC15.38■□□□□ 0.05
CHMP1AQ9HD42 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CHMP1AQ9HD42 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CHMP1AQ9HD42 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CHMP1AQ9HD42 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC15.38■□□□□ 0.05
CHMP1AQ9HD42 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
CHMP1AQ9HD42 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CHMP1AQ9HD42 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CHMP1AQ9HD42 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CHMP1AQ9HD42 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
CHMP1AQ9HD42 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC15.38■□□□□ 0.05
CHMP1AQ9HD42 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
CHMP1AQ9HD42 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CHMP1AQ9HD42 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
CHMP1AQ9HD42 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CHMP1AQ9HD42 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
CHMP1AQ9HD42 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC15.37■□□□□ 0.05
CHMP1AQ9HD42 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CHMP1AQ9HD42 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CHMP1AQ9HD42 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CHMP1AQ9HD42 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CHMP1AQ9HD42 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC15.37■□□□□ 0.05
CHMP1AQ9HD42 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CHMP1AQ9HD42 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CHMP1AQ9HD42 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CHMP1AQ9HD42 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC15.37■□□□□ 0.05
CHMP1AQ9HD42 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CHMP1AQ9HD42 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC15.37■□□□□ 0.05
CHMP1AQ9HD42 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
CHMP1AQ9HD42 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CHMP1AQ9HD42 CA15P1-201ENST00000481698 905 ntBASIC15.37■□□□□ 0.05
CHMP1AQ9HD42 AC142381.4-202ENST00000563973 229 ntBASIC15.37■□□□□ 0.05
CHMP1AQ9HD42 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
CHMP1AQ9HD42 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC15.37■□□□□ 0.05
CHMP1AQ9HD42 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CHMP1AQ9HD42 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC15.37■□□□□ 0.05
CHMP1AQ9HD42 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CHMP1AQ9HD42 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CHMP1AQ9HD42 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC15.37■□□□□ 0.05
CHMP1AQ9HD42 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC15.37■□□□□ 0.05
CHMP1AQ9HD42 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
CHMP1AQ9HD42 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CHMP1AQ9HD42 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
CHMP1AQ9HD42 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CHMP1AQ9HD42 AL163051.1-201ENST00000569214 1512 ntBASIC15.37■□□□□ 0.05
CHMP1AQ9HD42 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CHMP1AQ9HD42 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC15.37■□□□□ 0.05
CHMP1AQ9HD42 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC15.37■□□□□ 0.05
CHMP1AQ9HD42 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
CHMP1AQ9HD42 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
CHMP1AQ9HD42 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
CHMP1AQ9HD42 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
CHMP1AQ9HD42 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CHMP1AQ9HD42 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC15.36■□□□□ 0.05
CHMP1AQ9HD42 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC15.36■□□□□ 0.05
CHMP1AQ9HD42 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
CHMP1AQ9HD42 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CHMP1AQ9HD42 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
CHMP1AQ9HD42 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CHMP1AQ9HD42 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CHMP1AQ9HD42 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
CHMP1AQ9HD42 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CHMP1AQ9HD42 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CHMP1AQ9HD42 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC15.36■□□□□ 0.05
CHMP1AQ9HD42 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC15.36■□□□□ 0.05
CHMP1AQ9HD42 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
CHMP1AQ9HD42 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CHMP1AQ9HD42 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CHMP1AQ9HD42 KRT18P23-201ENST00000435622 1283 ntBASIC15.36■□□□□ 0.05
CHMP1AQ9HD42 AL158047.1-201ENST00000445918 881 ntBASIC15.36■□□□□ 0.05
CHMP1AQ9HD42 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CHMP1AQ9HD42 AC116562.2-201ENST00000507042 360 ntBASIC15.36■□□□□ 0.05
CHMP1AQ9HD42 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC15.36■□□□□ 0.05
CHMP1AQ9HD42 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC15.36■□□□□ 0.05
CHMP1AQ9HD42 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC15.36■□□□□ 0.05
CHMP1AQ9HD42 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC15.36■□□□□ 0.05
CHMP1AQ9HD42 ITM2C-210ENST00000620962 501 ntBASIC15.36■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms