Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC28BQ9BUN5 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC28BQ9BUN5 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC28BQ9BUN5 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
CCDC28BQ9BUN5 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
CCDC28BQ9BUN5 DOC2GP-204ENST00000639052 2548 ntBASIC17.36■□□□□ 0.37
CCDC28BQ9BUN5 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC28BQ9BUN5 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC17.35■□□□□ 0.37
CCDC28BQ9BUN5 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC17.35■□□□□ 0.37
CCDC28BQ9BUN5 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC28BQ9BUN5 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC17.35■□□□□ 0.37
CCDC28BQ9BUN5 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC28BQ9BUN5 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC28BQ9BUN5 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC28BQ9BUN5 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC28BQ9BUN5 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC28BQ9BUN5 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC28BQ9BUN5 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC28BQ9BUN5 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
CCDC28BQ9BUN5 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC28BQ9BUN5 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC17.35■□□□□ 0.37
CCDC28BQ9BUN5 MIR935-201ENST00000401179 91 ntBASIC17.35■□□□□ 0.37
CCDC28BQ9BUN5 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC17.35■□□□□ 0.37
CCDC28BQ9BUN5 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC28BQ9BUN5 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
CCDC28BQ9BUN5 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC17.35■□□□□ 0.37
CCDC28BQ9BUN5 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC17.35■□□□□ 0.37
CCDC28BQ9BUN5 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC17.35■□□□□ 0.37
CCDC28BQ9BUN5 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC17.35■□□□□ 0.37
CCDC28BQ9BUN5 AP003041.3-201ENST00000527151 707 ntBASIC17.35■□□□□ 0.37
CCDC28BQ9BUN5 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC17.35■□□□□ 0.37
CCDC28BQ9BUN5 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC17.35■□□□□ 0.37
CCDC28BQ9BUN5 ETFA-216ENST00000560726 942 ntTSL 3 BASIC17.35■□□□□ 0.37
CCDC28BQ9BUN5 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC17.35■□□□□ 0.37
CCDC28BQ9BUN5 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC17.35■□□□□ 0.37
CCDC28BQ9BUN5 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC28BQ9BUN5 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC28BQ9BUN5 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC17.35■□□□□ 0.37
CCDC28BQ9BUN5 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC17.35■□□□□ 0.37
CCDC28BQ9BUN5 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC28BQ9BUN5 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC28BQ9BUN5 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC28BQ9BUN5 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC28BQ9BUN5 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC28BQ9BUN5 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
CCDC28BQ9BUN5 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC17.35■□□□□ 0.37
CCDC28BQ9BUN5 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC17.35■□□□□ 0.37
CCDC28BQ9BUN5 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
CCDC28BQ9BUN5 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC28BQ9BUN5 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC28BQ9BUN5 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CCDC28BQ9BUN5 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
CCDC28BQ9BUN5 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC28BQ9BUN5 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC28BQ9BUN5 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC17.34■□□□□ 0.37
CCDC28BQ9BUN5 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
CCDC28BQ9BUN5 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC28BQ9BUN5 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC28BQ9BUN5 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC28BQ9BUN5 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC28BQ9BUN5 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC28BQ9BUN5 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC28BQ9BUN5 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC17.34■□□□□ 0.37
CCDC28BQ9BUN5 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
CCDC28BQ9BUN5 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
CCDC28BQ9BUN5 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
CCDC28BQ9BUN5 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC17.34■□□□□ 0.37
CCDC28BQ9BUN5 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC17.34■□□□□ 0.37
CCDC28BQ9BUN5 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
CCDC28BQ9BUN5 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC17.34■□□□□ 0.37
CCDC28BQ9BUN5 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC28BQ9BUN5 AL353719.1-201ENST00000566847 864 ntBASIC17.34■□□□□ 0.37
CCDC28BQ9BUN5 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
CCDC28BQ9BUN5 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
CCDC28BQ9BUN5 AC008687.5-201ENST00000593746 558 ntBASIC17.34■□□□□ 0.37
CCDC28BQ9BUN5 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC17.34■□□□□ 0.37
CCDC28BQ9BUN5 GRAMD4P8-201ENST00000605465 1115 ntBASIC17.34■□□□□ 0.37
CCDC28BQ9BUN5 AC010240.3-201ENST00000607688 395 ntBASIC17.34■□□□□ 0.37
CCDC28BQ9BUN5 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC28BQ9BUN5 AC008894.3-201ENST00000624324 3103 ntBASIC17.34■□□□□ 0.37
CCDC28BQ9BUN5 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC28BQ9BUN5 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
CCDC28BQ9BUN5 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC28BQ9BUN5 PCDH8P1-201ENST00000428983 2773 ntBASIC17.34■□□□□ 0.37
CCDC28BQ9BUN5 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
CCDC28BQ9BUN5 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC17.34■□□□□ 0.37
CCDC28BQ9BUN5 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
CCDC28BQ9BUN5 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC28BQ9BUN5 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
CCDC28BQ9BUN5 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC28BQ9BUN5 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC17.33■□□□□ 0.37
CCDC28BQ9BUN5 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC28BQ9BUN5 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC17.33■□□□□ 0.37
CCDC28BQ9BUN5 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC28BQ9BUN5 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC28BQ9BUN5 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CCDC28BQ9BUN5 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC17.33■□□□□ 0.37
CCDC28BQ9BUN5 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC17.33■□□□□ 0.37
CCDC28BQ9BUN5 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC17.33■□□□□ 0.37
CCDC28BQ9BUN5 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 62.1 ms