Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 MIR3652-201ENST00000579335 131 ntBASIC17.7■□□□□ 0.42
VPS35Q96QK1 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VPS35Q96QK1 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC17.7■□□□□ 0.42
VPS35Q96QK1 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC17.7■□□□□ 0.42
VPS35Q96QK1 NSUN5P1-202ENST00000421140 1535 ntBASIC17.7■□□□□ 0.42
VPS35Q96QK1 NSUN5P2-203ENST00000457352 1529 ntBASIC17.7■□□□□ 0.42
VPS35Q96QK1 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VPS35Q96QK1 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VPS35Q96QK1 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VPS35Q96QK1 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC17.7■□□□□ 0.42
VPS35Q96QK1 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VPS35Q96QK1 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VPS35Q96QK1 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VPS35Q96QK1 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
VPS35Q96QK1 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
VPS35Q96QK1 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
VPS35Q96QK1 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC17.69■□□□□ 0.42
VPS35Q96QK1 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC17.69■□□□□ 0.42
VPS35Q96QK1 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS35Q96QK1 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC17.69■□□□□ 0.42
VPS35Q96QK1 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VPS35Q96QK1 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS35Q96QK1 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS35Q96QK1 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC17.69■□□□□ 0.42
VPS35Q96QK1 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC17.69■□□□□ 0.42
VPS35Q96QK1 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
VPS35Q96QK1 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC17.69■□□□□ 0.42
VPS35Q96QK1 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS35Q96QK1 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
VPS35Q96QK1 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VPS35Q96QK1 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC17.69■□□□□ 0.42
VPS35Q96QK1 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS35Q96QK1 DANCR-204ENST00000444958 709 ntTSL 3 BASIC17.69■□□□□ 0.42
VPS35Q96QK1 NUS1P1-201ENST00000446295 882 ntBASIC17.69■□□□□ 0.42
VPS35Q96QK1 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VPS35Q96QK1 KRT18P56-201ENST00000507275 550 ntBASIC17.69■□□□□ 0.42
VPS35Q96QK1 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC17.69■□□□□ 0.42
VPS35Q96QK1 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS35Q96QK1 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC17.69■□□□□ 0.42
VPS35Q96QK1 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC17.69■□□□□ 0.42
VPS35Q96QK1 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC17.69■□□□□ 0.42
VPS35Q96QK1 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS35Q96QK1 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS35Q96QK1 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS35Q96QK1 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS35Q96QK1 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC17.69■□□□□ 0.42
VPS35Q96QK1 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VPS35Q96QK1 AC100803.2-201ENST00000562459 1963 ntBASIC17.69■□□□□ 0.42
VPS35Q96QK1 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS35Q96QK1 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC17.69■□□□□ 0.42
VPS35Q96QK1 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS35Q96QK1 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS35Q96QK1 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS35Q96QK1 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS35Q96QK1 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC17.69■□□□□ 0.42
VPS35Q96QK1 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC17.69■□□□□ 0.42
VPS35Q96QK1 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VPS35Q96QK1 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS35Q96QK1 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VPS35Q96QK1 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS35Q96QK1 MED29-202ENST00000594368 1471 ntTSL 2 BASIC17.69■□□□□ 0.42
VPS35Q96QK1 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
VPS35Q96QK1 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS35Q96QK1 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS35Q96QK1 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC17.68■□□□□ 0.42
VPS35Q96QK1 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC17.68■□□□□ 0.42
VPS35Q96QK1 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC17.68■□□□□ 0.42
VPS35Q96QK1 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC17.68■□□□□ 0.42
VPS35Q96QK1 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS35Q96QK1 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS35Q96QK1 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
VPS35Q96QK1 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS35Q96QK1 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VPS35Q96QK1 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VPS35Q96QK1 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC17.68■□□□□ 0.42
VPS35Q96QK1 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VPS35Q96QK1 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC17.68■□□□□ 0.42
VPS35Q96QK1 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC17.68■□□□□ 0.42
VPS35Q96QK1 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
VPS35Q96QK1 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC17.68■□□□□ 0.42
VPS35Q96QK1 AC009533.2-201ENST00000543664 586 ntBASIC17.68■□□□□ 0.42
VPS35Q96QK1 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC17.68■□□□□ 0.42
VPS35Q96QK1 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS35Q96QK1 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
VPS35Q96QK1 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC17.68■□□□□ 0.42
VPS35Q96QK1 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
VPS35Q96QK1 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS35Q96QK1 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC17.68■□□□□ 0.42
VPS35Q96QK1 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
VPS35Q96QK1 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC17.68■□□□□ 0.42
VPS35Q96QK1 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS35Q96QK1 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
VPS35Q96QK1 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VPS35Q96QK1 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS35Q96QK1 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS35Q96QK1 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VPS35Q96QK1 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS35Q96QK1 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
VPS35Q96QK1 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
VPS35Q96QK1 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms