Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CHMP4CQ96CF2 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CHMP4CQ96CF2 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CHMP4CQ96CF2 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CHMP4CQ96CF2 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CHMP4CQ96CF2 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CHMP4CQ96CF2 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CHMP4CQ96CF2 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CHMP4CQ96CF2 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC21.25■□□□□ 0.99
CHMP4CQ96CF2 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CHMP4CQ96CF2 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC21.25■□□□□ 0.99
CHMP4CQ96CF2 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
CHMP4CQ96CF2 BAALC-202ENST00000306391 243 ntTSL 5 BASIC21.25■□□□□ 0.99
CHMP4CQ96CF2 BAALC-204ENST00000330955 222 ntTSL 5 BASIC21.25■□□□□ 0.99
CHMP4CQ96CF2 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC21.25■□□□□ 0.99
CHMP4CQ96CF2 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CHMP4CQ96CF2 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CHMP4CQ96CF2 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC21.25■□□□□ 0.99
CHMP4CQ96CF2 AL450487.1-201ENST00000426799 995 ntBASIC21.25■□□□□ 0.99
CHMP4CQ96CF2 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CHMP4CQ96CF2 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC21.25■□□□□ 0.99
CHMP4CQ96CF2 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CHMP4CQ96CF2 UNC93B7-201ENST00000509439 705 ntBASIC21.25■□□□□ 0.99
CHMP4CQ96CF2 FOSL1P1-201ENST00000511041 816 ntBASIC21.25■□□□□ 0.99
CHMP4CQ96CF2 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CHMP4CQ96CF2 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC21.25■□□□□ 0.99
CHMP4CQ96CF2 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC21.25■□□□□ 0.99
CHMP4CQ96CF2 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
CHMP4CQ96CF2 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC21.25■□□□□ 0.99
CHMP4CQ96CF2 AC138894.3-201ENST00000603787 634 ntBASIC21.25■□□□□ 0.99
CHMP4CQ96CF2 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC21.25■□□□□ 0.99
CHMP4CQ96CF2 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC21.25■□□□□ 0.99
CHMP4CQ96CF2 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
CHMP4CQ96CF2 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC21.25■□□□□ 0.99
CHMP4CQ96CF2 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CHMP4CQ96CF2 AC018470.1-201ENST00000624790 3129 ntBASIC21.25■□□□□ 0.99
CHMP4CQ96CF2 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CHMP4CQ96CF2 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CHMP4CQ96CF2 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC21.25■□□□□ 0.99
CHMP4CQ96CF2 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CHMP4CQ96CF2 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
CHMP4CQ96CF2 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC21.24■□□□□ 0.99
CHMP4CQ96CF2 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC21.24■□□□□ 0.99
CHMP4CQ96CF2 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CHMP4CQ96CF2 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CHMP4CQ96CF2 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CHMP4CQ96CF2 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC21.24■□□□□ 0.99
CHMP4CQ96CF2 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC21.24■□□□□ 0.99
CHMP4CQ96CF2 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CHMP4CQ96CF2 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CHMP4CQ96CF2 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC21.24■□□□□ 0.99
CHMP4CQ96CF2 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC21.24■□□□□ 0.99
CHMP4CQ96CF2 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CHMP4CQ96CF2 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC21.24■□□□□ 0.99
CHMP4CQ96CF2 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC21.24■□□□□ 0.99
CHMP4CQ96CF2 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC21.24■□□□□ 0.99
CHMP4CQ96CF2 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC21.24■□□□□ 0.99
CHMP4CQ96CF2 AC074051.2-201ENST00000565115 352 ntBASIC21.24■□□□□ 0.99
CHMP4CQ96CF2 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC21.24■□□□□ 0.99
CHMP4CQ96CF2 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
CHMP4CQ96CF2 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
CHMP4CQ96CF2 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CHMP4CQ96CF2 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CHMP4CQ96CF2 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC21.24■□□□□ 0.99
CHMP4CQ96CF2 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC21.24■□□□□ 0.99
CHMP4CQ96CF2 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
CHMP4CQ96CF2 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CHMP4CQ96CF2 PKD1P1-201ENST00000458669 6805 ntBASIC21.23■□□□□ 0.99
CHMP4CQ96CF2 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CHMP4CQ96CF2 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC21.23■□□□□ 0.99
CHMP4CQ96CF2 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CHMP4CQ96CF2 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CHMP4CQ96CF2 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC21.23■□□□□ 0.99
CHMP4CQ96CF2 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CHMP4CQ96CF2 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC21.23■□□□□ 0.99
CHMP4CQ96CF2 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC21.23■□□□□ 0.99
CHMP4CQ96CF2 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC21.23■□□□□ 0.99
CHMP4CQ96CF2 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC21.23■□□□□ 0.99
CHMP4CQ96CF2 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC21.23■□□□□ 0.99
CHMP4CQ96CF2 AP005901.3-202ENST00000581653 237 ntBASIC21.23■□□□□ 0.99
CHMP4CQ96CF2 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC21.23■□□□□ 0.99
CHMP4CQ96CF2 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
CHMP4CQ96CF2 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CHMP4CQ96CF2 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CHMP4CQ96CF2 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC21.23■□□□□ 0.99
CHMP4CQ96CF2 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
CHMP4CQ96CF2 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
CHMP4CQ96CF2 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
CHMP4CQ96CF2 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
CHMP4CQ96CF2 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
CHMP4CQ96CF2 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CHMP4CQ96CF2 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC21.23■□□□□ 0.99
CHMP4CQ96CF2 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
CHMP4CQ96CF2 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
CHMP4CQ96CF2 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CHMP4CQ96CF2 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
CHMP4CQ96CF2 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CHMP4CQ96CF2 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CHMP4CQ96CF2 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC21.22■□□□□ 0.99
CHMP4CQ96CF2 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms